GgaEX6015015 @ galGal3
Exon Skipping
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5434869-5436786:-
Coord C1 exon
chr17:5436699-5436786
Coord A exon
chr17:5435784-5435895
Coord C2 exon
chr17:5434869-5435027
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACTAATGGTAATTTTTTTAGCAT
3' ss Score
4.32
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GCCGTATCGATGCCCAGGAGATTGTACAGTCTCTTCGGGACCTGGGAGTTAAGATCTCTGAACAGCAGGCTGAAAAAATACTGAAGAG
Seq A exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
Seq C2 exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095-'5-11,'5-9,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(46.8=100)
A:
PF134991=EF-hand_7=PD(27.4=44.7)
C2:
PF0015322=Mito_carr=PU(35.1=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTATCGATGCCCAGGAGAT
R:
GCATGAGCACTTTCAAGCGAT
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]