HsaEX6063166 @ hg19
Exon Skipping
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:20663]
Coordinates
chr9:130863588-130866118:+
Coord C1 exon
chr9:130863588-130863675
Coord A exon
chr9:130864649-130864760
Coord C2 exon
chr9:130865960-130866118
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCCTCGCCTCTGTCTTGCAGCAT
3' ss Score
9.5
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GACGCATTGACGCGCAGGAGATCATGCAGTCCCTGCGGGACTTGGGAGTCAAGATATCTGAACAGCAGGCAGAAAAAATTCTCAAGAG
Seq A exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
Seq C2 exon
ATCTTTGATGTGGGTGAGAATCTAACGGTCCCGGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGACACCTGGTGGCAGGAGGTGGGGCAGGGGCCGTATCCAGAACCTGCACGGCCCCCCTGGACAGGCTCAAGGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339-'7-11,'7-10,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(28.0=31.8)
A:
PF0003627=EF-hand_1=PD(68.0=44.7)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGACGCGCAGGAGATC
R:
GCATGAGCACCTTGAGCCTG
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)