DreEX6011622 @ danRer10
Exon Skipping
Gene
ENSDARG00000035468 | slc25a25b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
Coordinates
chr5:31195459-31200163:+
Coord C1 exon
chr5:31195459-31195546
Coord A exon
chr5:31196819-31196930
Coord C2 exon
chr5:31200005-31200163
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTATCTGAACAGTAT
3' ss Score
7.89
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTCACATTGATTCGCAGGAGATCATGCAGTCACTACGAGACCTTGGGGTTCATATATCTGAGGAACAGGCTGAGAAGATTCTCAAGAG
Seq A exon
TATGGATAAAAATGGTACGATGACGATTGACTGGAACGAGTGGAGAGACTATCACCTCCTTCACCCCGCCGAAAACATTCCCGAAATCATCCTCTACTGGAAACACTCTACG
Seq C2 exon
ATATTTGACGTGGGGGAAAGTATGTTGGTACCGGATGAGTTTACGGCAGAGGAGAAGAACACAGGAATGTGGTGGCGACACCTGGTAGCAGGAGGTGGAGCAGGCGCTGTGTCCCGTACCTGTACTGCACCTCTGGACCGCCTCAAAGTTCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035468-'4-5,'4-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.3=100),PF118483=DUF3368=FE(76.3=100)
A:
PF134991=EF-hand_7=PD(25.4=44.7),PF118483=DUF3368=PD(5.3=5.3)
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATTGATTCGCAGGAGA
R:
TGCATGAGAACTTTGAGGCGG
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]