RnoALTD0031484-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77485150-77602905:+
Coord C1 exon
chr13:77485150-77485250
Coord A exon
chr13:77485251-77485452
Coord C2 exon
chr13:77602346-77602905
Length
202 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
ACCCTTGTTTTCTCTTGCAGATT
3' ss Score
13.86
Exon sequences
Seq C1 exon
GCAGGTGCCTGCATTCATTGCTCAGAGGTCGGATCTCATCTGGAGTTAGACTCACAGAGCACGTGGTCAAGAGAAATCATCAGAGAGGACGACATCACGAG
Seq A exon
GTACTGTGTGCTGTGGACCTTTTCCTATCCATCATGCCAATGGCCAGTTTAAGGCTTTCAGTAGGAATTGCATATTCCCCGGGACCCGAGACCTTTTGTCACTGAAACAACAACCTTGGGGATACTCTCCATGAAATGAGTTGGCCAACAGCGTCAACTCCTCTGGGCTTCACACGGTCCCTGAAATCACTCGAGAAAACAG
Seq C2 exon
ATTCCTATAACTCCATGTTGGCTACTACCAAAAGCTCTTGAACCAAGCTCTGGCTAAGAAGATGGGGATCGAAGGGGAAACAGTAGTCTTGAAGAACATGCTCATTGGTGTAAACCTGATCCTGTTGGGATCCATGCTCAAGCCTTCTGAATGCCGGCTGGAAGTGACTACAGAAAGGGTCCAGAGACAAACTGTGGAGGAGGAAGGAGGGGCTTCCAGCTACAACACATCCAGCAAGGAACAGCCTATGGTCTTTAACCATGTGTATAACATCAACGTGCCACTCGAAAGCCTCTGCTCCTCGGGGCTGGAGGCCTCAGCTGAGCAGGACGTGAGTGCCGAAGATGATACTCTGGCAGAATACACAGGCCAAACCTCAGACCATGAAAGCCAGGTCACCTTCACCCACAAGATCAACCTCCCCAAAAAAGCCTGCCCATGTGCAAGCTCTGCCCAGGTACTGCAGGAACTGTTGAGCCGAATCGAGATGCTGGAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-0-4,1-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.251
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTCACAGAGCACGTGGT
R:
CCATAGGCTGTTCCTTGCTGG
Band lengths:
306-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]