RnoEX6044975 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77485113-77604846:+
Coord C1 exon
chr13:77485113-77485250
Coord A exon
chr13:77602346-77602905
Coord C2 exon
chr13:77604370-77604846
Length
560 bp
Sequences
Splice sites
3' ss Seq
ACCCTTGTTTTCTCTTGCAGATT
3' ss Score
13.86
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GAGGCTCTCGTCTTAAAGCTACATGGTCCTTCCTGTTGCAGGTGCCTGCATTCATTGCTCAGAGGTCGGATCTCATCTGGAGTTAGACTCACAGAGCACGTGGTCAAGAGAAATCATCAGAGAGGACGACATCACGAG
Seq A exon
ATTCCTATAACTCCATGTTGGCTACTACCAAAAGCTCTTGAACCAAGCTCTGGCTAAGAAGATGGGGATCGAAGGGGAAACAGTAGTCTTGAAGAACATGCTCATTGGTGTAAACCTGATCCTGTTGGGATCCATGCTCAAGCCTTCTGAATGCCGGCTGGAAGTGACTACAGAAAGGGTCCAGAGACAAACTGTGGAGGAGGAAGGAGGGGCTTCCAGCTACAACACATCCAGCAAGGAACAGCCTATGGTCTTTAACCATGTGTATAACATCAACGTGCCACTCGAAAGCCTCTGCTCCTCGGGGCTGGAGGCCTCAGCTGAGCAGGACGTGAGTGCCGAAGATGATACTCTGGCAGAATACACAGGCCAAACCTCAGACCATGAAAGCCAGGTCACCTTCACCCACAAGATCAACCTCCCCAAAAAAGCCTGCCCATGTGCAAGCTCTGCCCAGGTACTGCAGGAACTGTTGAGCCGAATCGAGATGCTGGAGAGGGAGGTGTCAGTGCTGCGAGACCAGTGCAACACCAACTGCTGTCAGGAAAGTGCTGCCACAG
Seq C2 exon
GACAACTGGACTATGTCCCTCACTGCAGCGGCCATGGCAACTTTAGCTTCGAGTCCTGTGGCTGCATCTGCAATGAAGGCTGGTTTGGCAAGAACTGCTCAGAGCCCTACTGCCCATTGGGCTGCTCCAGTCGGGGTGTATGTGTCGATGGCCAGTGCATTTGTGACAGTGAATACAGCGGAGATGACTGTTCAGAGCTCCGGTGCCCAACAGACTGCAGTTCCCGAGGGCTCTGTGTGGATGGGGAATGTGTCTGTGAAGAGCCCTACACAGGCGAGGACTGCAGGGAGCTGCGTTGCCCTGGGGACTGTTCAGGGAAGGGGCAATGTGCCAATGGTACCTGCCTGTGCCAAGAGGGCTATGCTGGTGAGGACTGCAGTCAGCGACGGTGTCTGAATGCTTGCAGTGGGCGAGGTCACTGCCAGGAGGGGCTCTGCATCTGTGAGGAGGGCTACCAGGGCCCTGACTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-'4-8,'4-4,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.251 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=18.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTAGAGCACTTGCCTA
R:
GTGAGACCTGGCTCCAGCTC
Band lengths:
190-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]