MmuEX0048367 @ mm10
Exon Skipping
Gene
ENSMUSG00000015829 | Tnr
Description
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
Coordinates
chr1:159737511-159858440:+
Coord C1 exon
chr1:159737511-159737611
Coord A exon
chr1:159849986-159850545
Coord C2 exon
chr1:159858177-159858440
Length
560 bp
Sequences
Splice sites
3' ss Seq
ACCCTTGCTTTCTCTTGCAGATT
3' ss Score
13.58
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTGTCTGCATCAACTCATTGCTCAGAGGTCAGATCTCATCTGGAGTTAGAGTCACAGAGCACGTGGTCAAGAGAAACCATCAGAGAGGACGACATCACGAG
Seq A exon
ATTCCTATAACTCCATGCTGGCTACCACTGAGAGCTCTTGAACCAAAGTCTGGCTGAGAAGATGGGGATCGATGGGGAAACAGTAGTCTTGAAGAACATGCTCATTGGTGTAAACCTGATCCTGTTGGGATCCATGCTCAAGCCTTCTGAGTGTCGGCTGGAGGTGACTACAGAAAGGGCTCAGAGACAAACTGTGGAGGAGGAAGGAGGGGCTTCCAGCTACAATACTTCCAGCAAGGAACAGCCTATGGTCTTCAACCATGTGTATAACATCAACGTGCCACTTGAAAGCCTCTGCTCCTCGGGGCTGGAGGCCTCAGCTGAGCAGGACATGAGTGCTGAAGATGATACTCTGGCCGAATACATAGGCCAAACCTCAGACCATGAAAGCCAGGTTACCTTCACCCACAAGATCAACCTCCCCAAAAAAGCCTGCCCATGTGCAAGCTCTTCCCAGGTACTGCAGGAACTGCTGAGCCGGATCGAGATGCTGGAGAGGGAGGTGTCCTTGCTGCGAGACCAGTGCAATACCAACTGCTGTCAGGAAAGCGCTGCCACAG
Seq C2 exon
TTGCCCCTCCAGAGGACTTGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGACGGAATATGTGATCTCTTACCAGCCGACGGCCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGAGATTGGAGTGGTGTCACCATCATGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACGCTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015829_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.234 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004116=fn3=WD(100=87.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATCAACTCATTGCTCAGAGG
R:
TGATGGGAAGGCTGAGGATGT
Band lengths:
342-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types