GgaEX1059697 @ galGal3
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
NA
Coordinates
chr8:7319619-7346355:+
Coord C1 exon
chr8:7319619-7319927
Coord A exon
chr8:7343213-7343768
Coord C2 exon
chr8:7345879-7346355
Length
556 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCTCTTTGTCCACAGGTC
3' ss Score
13
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
GAGTGAGGGGAGAAGAGGGGAGAGCAGGAAATAAAAAAAAAAAATAATAAGGAAAAAAAAAAAAAAAAACAAGCCCCTGAAATTTAACCAAAGGAGGGAGCGGCTGCCAGGCAGTGCCGGGGTCCCTCCCCTCTGCCACAATAGGCAGCGGGCTGCCGGCCCCAGGCAGGCCCCAGGCCAAGCCCGGGGACCCCCCCCCCGGAACGGGGACCCCCCACTTCCACCCCAACGGCGGCGGGAGGAAAGAGGAAGCGGCAGGAGGCCGCTGGAGGCGGCTGGAAGCAAGAGGCCCCGGCCCGGGCCGGCCCG
Seq A exon
GTCCTCCTCACGCTTGACCAGCCAACGTTGGCTTAGAAGGCTCTTCCCTCTCCCAAGAAAATGGGGACTGACAGTGAAAACCCAGTCCTGAGAAATGTGCTCATCAGCTTCAACTTGCTGCTGCTGGGTGCTGTCCTGAAGCCGTTCGAGTGCCGGCTGGAGGTGACAACAGAGCCAGCCGAGAGGCCGGCAGTGGATGAGGAGGGGGGCCTGGCCAACTGCAGCCCACCCGTCAAAGAGCAGCCCATGGTCTTCCACCACATCTACAACATCAACGTCCCCGTGGACAGCTGCTGCTCCTCCATGCTCAGGTCTTCGGCTGAGGAGGTGAGTTCAGAAGACGACAGGCTGGCGGAGTACACGGAGCAGACCTCTGACAGCGAGAGCCAGGTCACCTTCACCCACAGGATAAACTTGCCCAAGCAGGCCTGTAAGTGCTCCACCTCCCTCCCGTCCCTGCAGGAGCTGCTGAGCAGGATTGAGATGCTGGAGAAGGAGGTCTCCATGCTCCGGGACCAATGCAACTCCAATTGCTGCCAAGAAAATGCAGCCACAG
Seq C2 exon
GACGCCTGGATTACACCTTACCATGCAGCGGCCACGGGAACTTCAGCCTGGAGTCGTGCCGTTGCATCTGCAGTGAGGGCTGGGCGGGCAGCAACTGCTCAGAGCCGCGCTGCCCACGGGGCTGCTCCAGCCGTGGGGTCTGCCTGGAGGGTCAGTGCGTCTGCGACAATGACTACGGCGGTGAGGACTGCTCCCAGCTCCGCTGCCCCGCCGGCTGCGGCTCCCGCGGGCTCTGCGTGGATGGAGAATGCATCTGCGAGGAGGGCTTTGGTGGGGAGGACTGCTCTCAGCCCCGCTGCCCCCGTGATTGCTCGGGAAGGGGACACTGTGACAACGGCACCTGTGTGTGCGCCGAGGGCTATGCTGGGGAGGACTGCGGGTGGCTGCGGTGTCCCAACGCCTGCAGCGGACGAGGCGTCTGCCAGGATGGCCTCTGCATCTGCGAGGACGGCTACGGAGGGCAGGACTGCTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAGGGGAGAGCAGGAA
R:
CACGACTCCAGGCTGAAGTTC
Band lengths:
358-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]