GgaEX1059697 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7010718-7013860:+
Coord C1 exon
chr8:7010718-7011044
Coord A exon
chr8:7011180-7011273
Coord C2 exon
chr8:7013384-7013860
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCCGTCCCTGCAGGAG
3' ss Score
12.96
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
GTCCTCCTCACGCTTGACCAGCCAACGTTGGCTTAGAAGGCTCTTCCCTCTCCCAAGAAAATGGGGACTGACAGTGAAAACCCAGTCCTGAGAAATGTGCTCATCAGCTTCAACTTGCTGCTGCTGGGTGCTGTCCTGAAGCCGTTCGAGTGCCGGCTGGAGGTGACAACAGAGCCAGCCGAGAGGCCGGCAGTGGATGAGGAGGGGGGCCTGGCCAACTGCAGCCCACCCGTCAAAGAGCAGCCCATGGTCTTCCACCACATCTACAACATCAACGTCCCCGTGGACAGCTGCTGCTCCTCCATGCTCAGGTCTTCGGCTGAGGAG
Seq A exon
GAGCTGCTGAGCAGGATTGAGATGCTGGAGAGGGAGGTCTCCATGCTCCGGGACCAATGCAACTCCAATTGCTGCCAAGAAAATGCAGCCACAG
Seq C2 exon
GACGCCTGGATTACACCTTACCATGCAGCGGCCACGGGAACTTCAGCCTGGAGTCGTGCCGTTGCATCTGCAGTGAGGGCTGGGCGGGCAGCAACTGCTCAGAGCCGCGCTGCCCACGGGGCTGCTCCAGCCGTGGGGTCTGCCTGGAGGGTCAGTGCGTCTGCGACAATGACTACGGCGGTGAGGACTGCTCCCAGCTCCGCTGCCCCGCCGGCTGCGGCTCCCGCGGGCTCTGCGTGGATGGAGAATGCATCTGCGAGGAGGGCTTTGGTGGGGAGGACTGCTCTCAGCCCCGCTGCCCCCGTGATTGCTCGGGAAGGGGACACTGTGACAACGGCACCTGTGTGTGCGCCGAGGGCTATGCTGGGGAGGACTGCGGGTGGCTGCGGTGTCCCAACGCCTGCAGCGGACGAGGCGTCTGCCAGGATGGCCTCTGCATCTGCGAGGACGGCTACGGAGGGCAGGACTGCTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.164 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGTCTTCGGCTGAGGAG
R:
ACTGACCCTCCAGGCAGAC
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]