HsaEX6035029 @ hg38
Exon Skipping
Gene
ENSG00000116147 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr1:175403140-175528369:-
Coord C1 exon
chr1:175528269-175528369
Coord A exon
chr1:175406216-175406777
Coord C2 exon
chr1:175403140-175403616
Length
562 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGGTTTCCGTTGCAGATT
3' ss Score
10.88
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTGGCTGTATCGTTTTAACTGCATAGAGGGCAGGTCTCTTTTGGAATTAGGATTAAAGAAAGTGCAGTAAAGAGAAAGCATCGAAGACACCATCACAAAAG
Seq A exon
ATTCCCACAACTCCATGCTGTGTGCTGCAGGCTGGTCCTGAACCCAGATCTCTGGCTGAGAGGATGGGGGCAGATGGGGAAACAGTGGTTCTGAAGAACATGCTCATTGGCATCAACCTGATCCTTCTGGGCTCCATGATCAAGCCTTCAGAGTGTCAGCTGGAGGTCACCACAGAAAGGGTCCAGAGACAGTCAGTGGAGGAGGAGGGAGGCATTGCCAACTACAACACATCCAGCAAAGAGCAGCCTGTGGTCTTCAACCACGTGTACAACATTAACGTGCCCTTGGACAACCTCTGCTCCTCAGGGCTAGAGGCCTCTGCTGAGCAGGAGGTGAGTGCAGAAGACGAGACTCTGGCAGAGTACATGGGCCAGACCTCAGACCACGAGAGCCAGGTCACCTTTACACACAGGATCAACTTCCCCAAAAAGGCCTGTCCATGTGCCAGTTCAGCCCAGGTGCTGCAGGAGCTGCTGAGCCGGATCGAGATGCTGGAGAGGGAGGTGTCGGTGCTGCGAGACCAGTGCAACGCCAACTGCTGCCAAGAAAGTGCTGCCACAG
Seq C2 exon
GACAACTGGACTATATCCCTCACTGCAGTGGCCACGGCAACTTTAGCTTTGAGTCCTGTGGCTGCATCTGCAACGAAGGCTGGTTTGGCAAGAATTGCTCGGAGCCCTACTGCCCGCTGGGTTGCTCCAGCCGGGGGGTGTGTGTGGATGGCCAGTGCATCTGTGACAGCGAGTACAGCGGGGATGACTGTTCCGAACTCCGGTGCCCAACAGACTGCAGCTCCCGGGGGCTCTGCGTGGACGGGGAGTGTGTCTGTGAAGAGCCCTACACTGGCGAGGACTGCAGGGAACTGAGGTGCCCTGGGGACTGTTCGGGGAAGGGGAGATGTGCCAACGGTACCTGTTTATGCGAGGAGGGCTACGTTGGTGAGGACTGCGGCCAGCGGCAGTGTCTGAATGCCTGCAGTGGGCGAGGACAATGTGAGGAGGGGCTCTGCGTCTGTGAAGAGGGCTACCAGGGCCCTGACTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147-'10-13,'10-11,14-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=16.9),PF079748=EGF_2=WD(100=17.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGCAGGTCTCTTTTGGA
R:
AGGGCTCTTCACAGACACACT
Band lengths:
344-906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains