DreEX0080371 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35375932-35413616:+
Coord C1 exon
chr2:35375932-35375988
Coord A exon
chr2:35407946-35408489
Coord C2 exon
chr2:35413143-35413616
Length
544 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCTTTTTGTCCACAGTGC
3' ss Score
10.04
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCACTAGTTATCCTTCTTTGTGGTGAGACAGGAGGAACATCAGCACTGGCACTTAAG
Seq A exon
TGCCAATCAGAGGTCTATTTGTGGAGTTGATGATCTCACCCTAGTGCCCGAGTTGTGATGTGGGGGTGCGCCATGGCAATACAAGGTTCAGTAGTGAGCCTGGCTCTACTGTTCTTCGGGATTCAAGCTGTTCCCAGCCCCACCAGCAAACTAGTGAGGACCACAAGGGTGAGGCGACAGGTTCCAGAGGGGGGCGATCCTGCTGACAACCAGATGCAGCCTATGGTCTTCAATCACGTATACAACATCAACGTACCTGTAGAGTCCCTCTGTTCAGTGGACCTAGATGCGGTGACAGGTCCAGAGACGAACAAAACAGCATCTGGGAGTGATAAGATGCCGACGGAGTACACAGAGGAAACAGTGGACTCGGACAGCCAGGTGACCTTCACCCATCGCATCAATATCCCAAAGCAGGCCTGTGCTTGTCCTTCAGCTACCACCATAGAGCAGCTGGCAAGCCGCATAGAGATGCTGGAGAGAGAGGTGTCGCTGCTTCGAACGCAGTGTAGCTCCAGCTGCTGCGGAGAGAGCTCTGTCATGG
Seq C2 exon
GTCGCCTAGACTTCGTCCCTCAGTGCGGCCATGGCACATTCAGTATGGAGGTTTGCGGGTGTGTTTGTGAAGAAGGCTGGATTGGCAAGAACTGCACTGAGCCACGCTGCCCAGACGACTGCTCGGGCCAGGGCATTTGCATCGAAGGCGATTGTGTTTGCGACCGTAATTTCGGTGGTGAAAACTGCTCCGAGCCACGATGTCCAAGTGACTGCTCTGACAGGGGCTTGTGTATTGACGGGGAGTGTGTTTGTGAGGAGGCCTTCGCGGGGGAGGACTGCTCACTGGGCAGATGTCTAAACGACTGCTCGGATCAAGGGGCCTGTGTGAACGGAAGCTGCCAGTGCCGATCCGGCTTCCTGGGGGAAGACTGCTCGCTCATCTTCTGCGCTAATAACTGCAGCCAGAGAGGTGTGTGCAAGGAGGGCTTCTGCGTCTGTCAAGAGGGATACACAGGAGATGACTGCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.307 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126612=hEGF=WD(100=8.2),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0),PF079748=EGF_2=WD(100=17.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCAGCACTGGCACTT
R:
GTTCACACAGGCCCCTTGATC
Band lengths:
356-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]