RnoALTD0032985-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89314305-89315764:+
Coord C1 exon
chr14:89314305-89314405
Coord A exon
chr14:89314406-89314513
Coord C2 exon
chr14:89315690-89315764
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CTCATATCTCTCTCCCCCAGTCT
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATCAAAACAAAACAGAAACAGGCCCGAGATACTGAAAGGACACAGTTTACAACAGCCTTGCTCTGCACTCTTGACCGCTTCCACACGGCCATTCATCTGTG
Seq A exon
GTACCTCCTTTCATCATTTCCAGACAAATGGACCAGGGCCCTGGCGCTAGAGGTGACCTTGGGTAGCCATACAGCCGCTTCCAGATCTTTTCTTCGTCTGTGGAACAA
Seq C2 exon
TCTTGGTGAAGTGACTCACTGGTGGGCCCTGACACTCTGGAAGTCTTCCCGAGAAGTGGACATCAGTCTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-0-1,1-1,2-1,3-1-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAACAGAAACAGGCCCGA
R:
TGTCAGAGACTGATGTCCACT
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]