RnoALTD0032985-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89314305-89315764:+
Coord C1 exon
chr14:89314305-89314405
Coord A exon
chr14:89314406-89314894
Coord C2 exon
chr14:89315690-89315764
Length
489 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTCATATCTCTCTCCCCCAGTCT
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATCAAAACAAAACAGAAACAGGCCCGAGATACTGAAAGGACACAGTTTACAACAGCCTTGCTCTGCACTCTTGACCGCTTCCACACGGCCATTCATCTGTG
Seq A exon
GTACCTCCTTTCATCATTTCCAGACAAATGGACCAGGGCCCTGGCGCTAGAGGTGACCTTGGGTAGCCATACAGCCGCTTCCAGATCTTTTCTTCGTCTGTGGAACAAGTGAGATTAGCAGCTTGGTTATGATTTCGTCCATAGTAAGAGAGGCTATGGAGCTACGGAGATGGCTCTGGATAACTTAAAATTGTCAGCTATCTCCAAAGAAAACTAGAAGGTGGAGGCTCCCGGGCAACTTTTCCGGGTTCGGGTAGAGAAGGTGTGGACAGGGCGTGTCGGGGCGCCAGGCCCTAGCTGCTATCAGCTGAGCCCTTCGGCCGAGCCAGAGCCCCGCGGTGACCCGTGGGCGGGGCTTCGGGTGACAGATCGGGGAAGGCGAAAGTGTGGTCAGAAAGGTTCTCCTTTCTGGTCCGCTCCCTCCTTTAAAAGGTCTGGCGCGCAGCTTCTCTCTCACAGTTCTCCTGCGCGGCCGGCCGGGACTGAGCG
Seq C2 exon
TCTTGGTGAAGTGACTCACTGGTGGGCCCTGACACTCTGGAAGTCTTCCCGAGAAGTGGACATCAGTCTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-0-1,1-1,2-1,3-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]