RnoALTD0034399-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001323 | Zfp157
Description
zinc finger protein 157 [Source:RGD Symbol;Acc:1359435]
Coordinates
chr12:18481177-18487166:-
Coord C1 exon
chr12:18487066-18487166
Coord A exon
chr12:18486887-18487065
Coord C2 exon
chr12:18481177-18481303
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CGAGTAGTGTGTCATTGCAGGGA
3' ss Score
3.81
Exon sequences
Seq C1 exon
CCATCTCTAAGTTCTGGATTGCACCCGGTATCTGTCGCCGCGTGACTCCCTACTGTCTGGACGCCCAGCAGGAGGCGGGCGCTCACTGGAGTCCCGAAATG
Seq A exon
GTGCGTTTACCCACGGCAGCGTCCCCAGCTCCGAGCCCCGCGTCAGGGTCGCTTGCGCCCCTGCCTCCTGCACTGTGGCCAGGCTGGGCCCCCTGCTGCAGCTCGGGGGTCTTGTCGCGTCTGCTCACGGGGTACCCGCAGTGACGCCCGTGACCAGGGCGGCTACAGATGCCTCCCAG
Seq C2 exon
GGATTGGTGTCATTTGAGGACGTAGCCGTGGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTGCCCAGAGGACCCTCTACAGGGATGTGATGCTGGAGAACTACAGCAGCCTGGTGTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001323-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTCTAAGTTCTGGATTGCACC
R:
AAGGACACCAGGCTGCTGTAG
Band lengths:
226-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]