RnoEX0101069 @ rn6
Exon Skipping
Gene
ENSRNOG00000001323 | Zfp157
Description
zinc finger protein 157 [Source:RGD Symbol;Acc:1359435]
Coordinates
chr12:18481177-18487178:-
Coord C1 exon
chr12:18487066-18487178
Coord A exon
chr12:18483942-18484035
Coord C2 exon
chr12:18481177-18481303
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGAATGAATTTATAGGCA
3' ss Score
4.92
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
CGCTTTCTTCTCCCATCTCTAAGTTCTGGATTGCACCCGGTATCTGTCGCCGCGTGACTCCCTACTGTCTGGACGCCCAGCAGGAGGCGGGCGCTCACTGGAGTCCCGAAATG
Seq A exon
GCACCACACGCATGCAGTAGTCTGAAGAAGCCGGAAGAGGGCCTCAGACTCATAGGAACTGGAGTTGCAGACAGCTGGCTACTGTGTAATGCTG
Seq C2 exon
GGATTGGTGTCATTTGAGGACGTAGCCGTGGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTGCCCAGAGGACCCTCTACAGGGATGTGATGCTGGAGAACTACAGCAGCCTGGTGTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001323_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000030757fB16876
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCCTACTGTCTGGACG
R:
GACACCAGGCTGCTGTAGTTC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]