RnoALTD0034424-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016562 | Zfp24
Description
zinc finger protein 24 [Source:RGD Symbol;Acc:727963]
Coordinates
chr18:15918621-15921754:-
Coord C1 exon
chr18:15921654-15921754
Coord A exon
chr18:15921610-15921653
Coord C2 exon
chr18:15918621-15919120
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTATTTCTTGTACCTTAGGAG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GACCGGAAGCCGTGCGCGCCGGGGGCTTGTGGGAAGCGGCTGAAAGCGGCGGCGCAGCGTCTGCCCGGGACGACGAGGCTGTGGCGGGTCCCGAGCCAGAG
Seq A exon
GTCAGCAGCGCGCGGGGGTAGGGTTCGAGGAGGCGGGGGCTCAG
Seq C2 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAGTTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGACGGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGTTCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACTGTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTGGAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGAACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016562-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.379
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGGAAGCGGCTGAAAG
R:
GGCAACTGAGGCAAGGTACAG
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]