RnoINT0167901 @ rn6
Intron Retention
Gene
ENSRNOG00000016562 | Zfp24
Description
zinc finger protein 24 [Source:RGD Symbol;Acc:727963]
Coordinates
chr18:15918621-15921734:-
Coord C1 exon
chr18:15921654-15921734
Coord A exon
chr18:15919121-15921653
Coord C2 exon
chr18:15918621-15919120
Length
2533 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TTTTATTTCTTGTACCTTAGGAG
3' ss Score
8.28
Exon sequences
Seq C1 exon
GGGGGCTTGTGGGAAGCGGCTGAAAGCGGCGGCGCAGCGTCTGCCCGGGACGACGAGGCTGTGGCGGGTCCCGAGCCAGAG
Seq A exon
GTCAGCAGCGCGCGGGGGTAGGGTTCGAGGAGGCGGGGGCTCAGGTAAGGGTCCAGAGGCCGGCGACGCTCAGCATTCCGGGCGTGCGCATAAAAGGCCGCGGCGGCGGAAGGGCGGCGGCGACCTGCGGCACTTCGGGGGTCCGCAGAGCCTCCAGCGCCCGCATCCTCTCCGGCCTGCTTTCCCCTCCCCCACGGGCCGGTTTTGTTCTATTTCGAGGCTCTAGCGGCTCGCGGAGGATTCTGGGAGACGCTCAAGCCGAGGGGGGATCCGGCCGTTCTCGCGCGCGACCTGCTGGGATTTGTAGTCCCGCCGGTCCCGGGCGGAAGTGCCTGTCCTGTGTGGCGGGGTGGTTCTGGGGCTTCTGCAGCCCTTCCTGGTGAATGCTGGGAAGAGGACGTCCGAGTTGCTGGGGCAGGCTGGGCTCAGCGCTGTGAGGCGGGCGGTCGCTGAAGACCAGGATCCCGCCGAGTGCCGGACGGCGTTCCTCCACATCCCACGAGCTTGGTGCAGTACAAAGTAAAAGAAAAAGCAGTTTCTATCACATAGAAATGCTTGATTGCTGATAGAATCGGGTCCAGGAATAAGAACTTAGATTTTGATATCAGGCCATCCCACTCCTGAGTGTCTATATGACCTGTCAGTTTGAGACAGCCTTTTCTGATCTTTTGTCTTCATCTTGATCGGTTTCAATATGGTTTTCTTAAGTTTCTGTCTCTTAAGTTCTTGGCTCTAATAAACAGTAGCCGTAAACTTATTATTCTTTATGTGCTGTAAACCGTGGCACGGCTATGATTTTGCAAATTCCAAAAGCATCAGAAAGTAGCTCAGATTTCCCCAAAGGAAAAGTTAGGGGAAGCTTCATCAGGGAAAAGACTCCCGTACACTGAGAAGTTGTGAGTGCTTTTTCCTAATAGAATTTGCTGTGGTTGAAGCTTGTCACTGTAAGTTTAAATGTATGTATGGTGTGGTGGAAGCCTGAGTAACATTTGTATGTTATGTGAAATAGTTCCTTCCCCAGTGTTATATGATCTGTTACTGAACTGTGTAAAAGAAAGTCTGTGACAAGATCTAATAGCCCAGGTTGGCTTTGCCACATGGATGACCATAATCTTGCTTCTGCATGTAAAGCCTACAATGTTGGGCTTTTGGGCGCATACCTATCTACTAGTGAACATTTTTCGCATATATTTTAAGTTTAGGGAGTTCCTAAACAAACATTAGAGTATTTGTGACAATTCTGGGGATTAGCTCAGCAGTAGAGCATGATGGGTAAGGATAGTCTCTCATTCTGGGGGATTCTAACTGGGAGAACGGTTGATCTATTTCCTACTCCAGGTTTGCAAAAAATGAAAAGTAGGGTGCCTCATCAGGTCGGGGGCTTGTTCCCAAGATCCCAGATTGCACATAGCAGGAGGGAACTAATGTCCCCTGACCTCCACACCTGTGCTGATGTGTTCCAACACGAAATAAATGTCAAAAAACATGTTTTATGTGTCCTACTGTTCTGAATACTTAGTTTGTTATTTTATGTATATTTGCACTGTGTGTTTGCCTGGTGCCTGAGGAGGTGAGAAGAGAGAGGAGTTTGTGGTTCAGGGAAACAAACCAGGGTCCACTGCAGGGGAATGCATTCTTAACTGCTGAACCAACTCTCCAGTCCCAAGCTTCAGGACGTTTGGAGAACACTGAGGTAGACTGCATCTTACCCAGATACTGTAGGCTATTAAATTACCCTTTGTAGACTATATGTCACAAATTAGCAATCTTTTTTTTTTCCTAAAAAGAGCAAGCTGGTAAATATTACATTGTTTTAGATCTTAGCTGAAATCATTGAATACTGTCAACTCTACCACATTATAGCCCAAACCACGATTAAATTTAATGACTTATATACACAAAATGTAAACATATTAATGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCCAGAGGACCCAAGTTCAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTCTAACTCCAGTTCTAAGGGGTCTGACATCCTCACACAGACATACATGCAAGCAAAAACAGTGTACATAAACCATTTTTAAAGACATTTTTACATCTTGTGTGTGTGTTTGTCTGTCTGTCTCTGTGTGTGTGTCTGTCTGTCCCACTTGTGAAGACCAGACTTGCAGAAATAATTTTTCTCTTATGTACATGTTGGTCATTGGACTCAAGTCATCAGGCCTTTGCCAGATGAGTAACCTTGCTGGTCCTAGACAGACACATCATATTTTCTCAGCATGAAGTATTTCTGTACTTTTTTAGTCATTAAAACGTTTACACTACTTCTCTACGGATGGTGTAGCAGGCAGCAGGGTAAATAGGCTGTGGTTTACCAGCTATGGCAGACTTTCAGTCAGTGTAAGTTATTGATTTCAAGTTTTAATCAAGTAAAGCAATGTATCTCTTTTTTTTTCCTTCTGCTTTTCGAATATCATGGGGTACTTGGTGATTTATGTGTTTTTTATTTCTTGTACCTTAG
Seq C2 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAGTTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGACGGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGTTCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACTGTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTGGAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGAACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016562:ENSRNOT00000022304:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.379
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]