HsaINT0186574 @ hg19
Intron Retention
Gene
ENSG00000172466 | ZNF24
Description
zinc finger protein 24 [Source:HGNC Symbol;Acc:13032]
Coordinates
chr18:32920195-32924426:-
Coord C1 exon
chr18:32924324-32924426
Coord A exon
chr18:32920698-32924323
Coord C2 exon
chr18:32920195-32920697
Length
3626 bp
Sequences
Splice sites
5' ss Seq
CCGGTGTGC
5' ss Score
4.89
3' ss Seq
TTTTATTTCTTATGCCTCAGGAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
CAGCCCGCGCCGGGGGCTTCTGGGAAAAGGCTTGTGAACGGCGTTTCTGCGTCTGCCGTGGACAGCGAAGCTGCTGCGGTTCCTGAGCCGGAGGTTTGCGCCG
Seq A exon
GTGTGCGGGGAACGTTATGAGAGGGAGGGGGGACACCGGGCTAGGGTCTGCGGACCTCTTAGCAGGAGCCGGCGGGGAAGCCTGTCCGGGACCTTCCTCAGCTTCCCGGGAGGCGCGGGGAACAGGCCGCGGTCTCCGCGCCTAGCAGTTGTGGGGCGGGGAGGGGTAGGCGGCAGGCCTGCTTGGGTCTTCGGCATTTGCAGAGAGCTCTCTAACCCCCTGTGTCCTCCGAGACCCTCACCTTCCCCCTCCCCCACCGGCCGGTTTTGTTCTATTTCGAGGCCCTGGCGTCTCGCGGAGGGTTCTGGGAGTCGTGATGGGAGGGGGTGGTAGTGGGACGAGACTTGCGCGGGGCTTCTGGGATTTGTAGTCTCACCGGCCGCAGGCGGAAGTGCCGTGGTTCCGACGCTGTTGTCACAGGGTGGCCTTTGGTCATCTGAAATCCGCGGTCCTGAGTGCTGGGAAGAGGGGCTAGAGGACGTCGGGCCGGGGCCGGGGCCGGGGCCGGGATACACAGCAGGTCTATGCAGCAGTAAGGTGGGCGATCCACCTGGGACGAGGTACCCTGCCCAAACATTGTCGGGACCGTGGGCCTTCCCTCCATTTCCCACAAGCGGTATGCTCTACAGCATAAAAGGAAGAGAAAATTATGTAGAAATACTTGCACCGTTGATAAGCAGGGTCTTGGAATAGGAACGAATGAATGTTGGCTAGACCTTATGTATAAGGCCACCACACTCCAGGGTATTTAATTAAACCAGTATGTATTACTTGTCTGATAAGGCCTTTTCTGATTCTAGTCTTCATCTTGCTTGGGTTACAATAAGTTTTTTTAAGTTGTTATTGTTCAGATTTTGGGCCCTGAATAAATAAATAGGCTGAATGGCTCATTGCTAGTATGTGTCGTAAACAACAGCACGGGCATGATCGTGCAAATAATAAAGGTCCAGAAGCAGTATACAGTTTCACTGAAGGTAGAAGCTGGGGAAACTGTGAGTCCTCCAGTGTAAGGACAAGACACTGGACCACTGCAGGAAGTCAAGGTGCTTATGCGAGTGCCTTTTCTTAATAGAAGTTTCTGTGATTAATGCCTATCATTATAAATATAAATGTACGTATGGTGTGGTGGAAGACTGAATATTTACGTATTATGTGCAAGATAATTTTTCAAAATTATGTGATGTTTTTCACATATGATCTTTTCAATATTATGTGATCTGCTACTCAGCAAGTGAACATTTTTTCACATATAAGTCCAAGGAGTTCTTAAACACCTTAAAAATATTTTTTAAATGGTAAAGAAAATTTTTTTAAGCACATAATAATAAAGCGAACCTTCCTTTTGAGTTGACTTGTGTGTGTCAGGAAACACCAATCCTGAATTGGAAATAATGCGTTCCAGGGTCAGGCACATTTAGAAAGCACTGAAGTAGTCTGGTTCTTACTTGGATTCTTTTGATTATTGACATAGGGTTTGTCGTCTTAGTAGGTCATGATTGGCAAACTTTTTCTGTAAGCGGCCATATAGTAAATAAGGTCATGCATAACTCAACGATAGTGCTATGGTCTGAGAAATATGTTAGGCTATTTCATCCTTGTGTGAACGTCATAGAATGTACTTGCACAAACCTAAATGGCGTAGCCTACTACACACTTAGGCTATCTGGTATAGCCTATTGCGCCTAGGCTACAAACCGGTACGGCATGTTGCTGTACTGAATACTGTAGAGAATTGTAACACAATGCTAACTATTTGTGTATCAAAACATAGAAAAGATAAGAGTAAAATATGATATAAAATGTTTGAAAAAAAAAAAAGATATGCCTGTACAGGGCACTTACCATGAATGGACCTCGCTGGATTGGAAGTTGCTCTAAGAAGTCAGTGAGTGAGTGGTGAATTTGGAGGCCTGGGACATTATTGTACATTCCTATAGACCATATAAACACTGAACACTTAGGCTACACTAAATTTATTAAGAAAACATTTTTCTTCAATAATTAACCTTAGCTTACTGGAACTTTTTCACTTACAAACTTTTACATTTTTTTTTAACTTTTTTACTCTTTTGTGATAACACTTCACTTAAAATACAAACACATTGTACAGCTGTACAAATATATTTATATCCTTATTCTGTAAGCTTTTTGCTTTTTTTTTTTTATAGACAGAGTCTCGCTCTGTCGCCAGGCTAGAGTGCAGTGGCGCGATCTTGGCTCACTGCAGCCTCCACCTCGCGGGTTCAAGAGATTCTCCTGCCTCAATCTCCCCAGTAGCTGGGACTACAGGCGCAATCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCTTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGTGCCCGGCACAGCTTTTTGCTATTTTTAAATTCATTTTTTAGAGACAGGGTCATACTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGATCATAGCTCAGTGGAGCCTTGAACTCCTGGTCTTTAGTGATCCTCCTGCCTCAGCCTCCTATAGTGCTGGGATTACAGGTGTGAACCATTGCACCTGGCCAATTTTTTTTTTCTTTTGGAACTGTTTTTGTTAAAAGCTAAGATAAACACATTAGCTTAGGCTTACACAGGGTCTGGATTATCAGTATCATTGCCTTCTACCTCCATATCTTGTCCCACTGGAAGGTTTTCAGGAGCAGTAACATACATGGAGCTGTCATCTCCATAATAACAGTGCCTTCTGTAATACCTCCTGAAGGACCTGCCTGAGGCCATTTTGCAGTTAACTTTTTTATTTAGTAAGTAGAAGGAGCACACTCTAAAATAATATAGTATAAAAAGTATAGTAAATACATAAACCAGTAACATAGTCGTTTATTATTGTTATCAAGTTTTATGTACCATACATAACTGTATGTGTTAAACTGGCAACACAGCAGGTTTGTTTACACCAGCATCACCACAAACATGTGAGTAATGTATTGACCTTACAACAGCTACAGTGTCACTAGGTGAATCTTGAATTTTTCAGCTCCATTATAATCTTATGGGAGCACTGTCATCTAGGTGGTCCTTCATTGACCCAAACATCATTTTGTAGTGCATGACTGTGTTGGGTTTTTTTTAGGCCATCTAGTCTGTTGAAACTACTCAACTCTGCTATTGTAGCGTGAAGTATGAGTAAGTACAATTATTTATGGACACAGTCATGTTAATTTCATATCATTTTCACGTGTCATGAGGTATTCATTTGATTTTGGGGAGCTCCATTCCCTAAATATCATTAGGTATTCATTTGATTTTAGGGATCTCCGCTCCGTAAGGCACTGTGATGAAGACCACAGCCATTTAAAAATGTGAAAATTATTGTTGGTGCAAGTGTTGTACAGAAATGGGTGGCAGGCTAGATTTGGCCGTGAAGCTGTAGTTTGCCAATTCCTGGTGTAGGTTATTGATTGGAATTTTTAACTCAAAGAACAAGTATCTTTTACTTTTACCAGTATAAGTTCAAATTCTTAGGATATTTTTGCTTATTTATATATCTTTTATTTCTTATGCCTCAG
Seq C2 exon
GAGTGCCTGTGAAGAAAACGGGGTATTGCCCTGAGGCTTATATTCTGCCTCAGTTGTCTTTTCTTGAAATATTATAAATCAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTGAGAGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGATCAAGTATCCCCTGGAACCATCTCCCAGACCCAGAGATTTTCCGACAGCGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGTGAGGCTGTGAGCCAGCTCCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACGCACACAAAAGAACAAATCTTGGAGCTGGTAGTGCTGGAGCAGTTTGTTGCCATCCTACCCAAAGAGCTACAGACTTGGGTTCGAGATCATCATCCAGAGAATGGAGAGGAGGCAGTGACAGTGCTGGAGGATTTGGAGAGTGAACTTGATGACCCTGGACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172466-ZNF24:NM_006965:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)