BtaINT0165102 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010255 | ZNF24
Description
Bos taurus zinc finger protein 24 (ZNF24), mRNA. [Source:RefSeq mRNA;Acc:NM_001205479]
Coordinates
chr24:22025794-22028208:+
Coord C1 exon
chr24:22025794-22025838
Coord A exon
chr24:22025839-22027709
Coord C2 exon
chr24:22027710-22028208
Length
1871 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
TTTCATTTCTTGTGTCTCAGGAG
3' ss Score
8.5
Exon sequences
Seq C1 exon
GCGTCGGACGAGGACAGCGAAGCGGCTGTGGTTCCCGAGCCCGAG
Seq A exon
GTTTGCGCGAGTAGGGGGGAAGGGTGTGAGGGAGACGCTGGCCTGGGGGCTGCAGACTGCTTGACAAGAGTCAGCGAAGAAGCCTGGCGGGAACCTTCCTCGGCTTCTTCCAGAGGCGCGGGGGACAGGCCGCGGTCTCCGTGCCCGGCAGTTGTGGGACGGGCAAGGGAAGACAGAAAGCCAGATAGGGCTTTCAGCACCCTCGAAGAGTCCTCCATCCCTTGTGTCCTTCGCGACCCCCGACTTCCCCTCCCCCACCAGCCGGTTTTGTTCTATTTCGAGGCCCTGGAATCTCGCGGAGAGTTCTGGGATTCTTTTCGGGCGGAGGTGGGAGTGGGCGGGCCTCGCGCGGGGCCTGCCGGGACTTGTAGTTCAGCCGGCCGCGGGCGGAAGTGCCGCGGGTCGTTTGCTGTTGCGGCCGGGTGGCATTCGGTCTGAGGAAAGCCGCCGCCGCGAGTGCGGGGAGAGGGGGCTGAAGTTGTTGGGGTGGGGGCGCAGTTCGCAGCGGCACTCTGCAGGATTGCGTGGGGAGGTCACCTGGGACGGGGCTCTCCGCCCAAAGACGGTCGGGACCGCGGGCCTGCGCTTGCCGCACCTCCTCACATCCCACTGCCAGGGTGCTGTTTGAGAACGTAAAAAGAAGAGAAATTTCTTTTCTATAGAATGCTGAGCCGTAGAAAGGTAGGGTCTTGGAATAGAAACAGATCTATAGGCCAAAGCTACATGTTTATAAGGCCGCCACACTCCAGAGTATTGTATTAAACTTGTGTGTATGTTACCTGATAAGATCTTTTCTGATTCCTAGTTTTGGTAGAGTTACAGGAAGTTTTTGGAAATTAGCTTTCATATTCTGGGGCCTGTATGGGTGCATTGAGCAGCTGCGTGGCTCATTCTTGACGGGTGTTGTAGACAATGGCATGGGCATGACTGTGCAAATACCAAGGAAAGGATCAGAAATAGCACAAGGTTTCCATGAAGGTAGTAACTGTGGAGATTGTGAGTCATTCAGTGTCAGCGGAAGAATCTGCATCACAAAGGTGTTAACGAGAGTTCTTTCCCCTAGAATTTGCTGATTAATGCCTGTCGTTCCTAATTTAAAGGTATTTATGGGGTGGAGAGTAACTGAAAAATAATTAAATTTTATGGCACATAGTGGTTACTTTTTCCAACATTATTATCTATTCCTGAGCAAGTGAATTTTTTTTAAAACGTATATTTAAAGTCCTAGTAGTTCTTAAACATTTAAAAAATAACCCTTAAACGTTTTGTGAAAAAAAAATTTTTTAAACAGATAATAAAAAAGCAGTCCCTGCTTGTGAGATGACCTAAGTGTGTCAAGGAACACCAGTATTGAATTATAGATAATGTGTTCAAGGGTCAGATGCATTTAGATAACACTGAGAAGGGCTGGTTTTTAACTTAGATTCTTTTGATTGTTGAAATAAGTTTTGTTGATCATAGGTTGGCAAACTTTATCTCTAAAGGACCAGGGTAAATATTAAGTTTCTCATGCCCTATAGTGCCTATTGCAACTACTCAACTCTGCTATTGTAGTGTGACAAATGAATAAAATTATTTATGAGACAGATGATTTAATTTCATGTCATTTTCACATGTCATGGAGTGTTCTTTTGATTTTTTTCCAACCATGTACAAGTGTGAAAACTATTCTTAGTATATGCATTGTACAAAAATGGGCAGCAGGCCAGATTTGGCCATGAGCTGTAGTTTGCAAACTTCTGGTTCAGGTTATTTATTGATTGGAATTTTTAATCTAGTAAAAGAATACATTGTTATTTCCTTTAATCATTCTGTGTCCAGGTTCTTAGAATGTTTAGTCATTTACATATTTTTCATTTCTTGTGTCTCAG
Seq C2 exon
GAGTGCCTGTGAAGAAAACTGGGTATTTCCCTAAGGTATCTTGCCTTGATTGTCTTTCCTTGAAGTATTACAAATCAGGATGTCTGCACAGTCAGTGGAAGAGGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTAAGAGTGAAGTTGGAGGAGGATCCTGATGGTGAAGAGGGGTCGAGTATCCCCTGGAACCATCTTCCTGACCCGGAGGTTTTCCGCCAGAGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGGGAAGCTGTGAGCCAGCTTCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACACACACAAAAGAACAAATCTTGGAGCTGGTTGTACTGGAGCAGTTTGTTGCCATCCTTCCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCATCCAGAGAATGGAGAGGAGGCGGTGACAGTCCTGGAGGATTTAGAGAGTGAACTAGATGACCCTGGACAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010255:ENSBTAT00000002428:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.364
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACGAGGACAGCGAAG
R:
GACGGCAAAGTTCTCGAAGCT
Band lengths:
356-2227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]