RnoALTD0034526-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212362519-212363668:+
Coord C1 exon
chr1:212362519-212362633
Coord A exon
NA
Coord C2 exon
chr1:212363319-212363668
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGACTGCTTTTCTGTTCCAGAAT
3' ss Score
10.82
Exon sequences
Seq C1 exon
CCATGCCAGCTGCTGCAGACACAGCAGCCAGAGCCCTGAGAGATGACAGCGATGCCATGGAGGTCTGCTTGGAACCTGCTGCCCCACCTCCCTGCAGAAGGACCTACAGTCACAG
Seq A exon
NA
Seq C2 exon
AATACCTTCTACTGTCTGTTTTGGCCAGGGTGCAGCCAGAGGGTTTAAAAGCACCAAGAAAAAAAACAAACACCACTGATGGATCCAGGCTAGGAAAGCCAGACAGACTTTCAGGGAGGGGTGTGCCAGGGCCTTGCTTCTGGATCGATGCCCTGAGCTGGACCCTTGCCACCTCCTTATTTCCATCTCTGGTCACTTGAAACAACCAGTGTGAAGAAACCCAGGATCTGCAGATTCCAGAAATAACCAGGAACACTGAAGGAGGGAGGTGGAGAGACCACTTACCTGCTCTGCAGTACCTACTCTAAGAATGTCACTATGAGCACATGTAATAAATTCTTTTTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272-6-8,7-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGTCTGCTTGGAACC
R:
ACCCCTCCCTGAAAGTCTGTC
Band lengths:
182-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]