HsaALTD0007459-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135125225-135126662:+
Coord C1 exon
chr10:135125225-135125320
Coord A exon
chr10:135125321-135125345
Coord C2 exon
chr10:135126292-135126662
Length
25 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
GAAACTTTCTTCCATCCCAGAAT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAG
Seq A exon
GTGAGAGGCGGATCTACAGACATAG
Seq C2 exon
AATACCCTCTACCATCTGCTTTGGTCAGGGTGCCGCTCGAGGATTTAAAAGCAACAAGAAGAAAACCAAACAATGCTGATAGACTCAGAAAAGGAGTGGGGGGCAGTCACCACTGCTGGGCGTGGCATCCGCCTTGGGCCTTTCTCCGACCTTCTGGTGTGGCCGCCCTGGGGGCCAGGCCCTCGCCATCCTCCCCATCCTTGTTCCTCAGCAAATGGCATTAGCAGCTGTCATCAGAAGCTGTGAGGGACCCACAGATTTTGGAAACGACCTGGACACACTATTGGGAAGGAGATGTGGACGGCCTGTCTCCTCCTGCAGGGCCCACCCTAAGAATGTATTTTTAAACACATGAAATAAGTATTTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGGAGAGCGGTCAGAA
R:
TTTAAATCCTCGAGCGGCACC
Band lengths:
125-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)