HsaINT0187455 @ hg19
Intron Retention
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135125220-135126666:+
Coord C1 exon
chr10:135125220-135125345
Coord A exon
chr10:135125346-135126291
Coord C2 exon
chr10:135126292-135126666
Length
946 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
GAAACTTTCTTCCATCCCAGAAT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCCAGCCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAGGTGAGAGGCGGATCTACAGACATAG
Seq A exon
GTCAGTGTCTGAGCTCTTTCTGAAACCCGTTCTCAACATGTGTTCGGTGCTGAGGATTCTGGGCTGCACCTGGGCCGCAGCTCTTCTCATACTGAATTCAGAAAGGTAACGCTGGGTAAGAAAATCGGCTTCCGCCAGAGAAGAAAGTCCAGATATCTCAGGTCCTGTGAATAACTTAGTTTCTCTCGCATACTCTGTTTTTGAGCCATTGAAGCGCAGGAATGCCAAGCACCACTCACTTTTCCTCATTGTCTGAGTGGGATGGAAAGAGTCTCACTTGCAGTTGCTTCAGTCACAACCCAGGCGTCTGCCTTAATAGCATCACCTGTGCCGTCTGCGTTTCTAGCGTCACCTGTGCCGTCTGCGTTTCTAGCGTCACCTGTGCCGTCTGCCTTCCTAGCATGACCTGTGCCGTCTGCCTTTCTAGCATGACCTGTACTGTCTGCCTTTCTAGCGTCACCTGTGCCGTCTGCCTTTCTAGTTAAAGTTGATTTTAAATTAATTTGGGAAAAACGGTGAACAAGTGGGGAAAAACATCACCAAAGACTCCAAACAGGTGGAACGATGAACTTAATGTTCCCTGCACCCTCCTTACAGATGCCTGGACTTTGGCCTGTGAATGAGCCCCGGGGGGCTGGGACAGTAGGGGTTTTCATGGAATGGACATGGGGTAGCAGGAAGTCTCAGCCCCAGAGGGCTTGGCAGGAGCCGCCCTCTCTGCGGAGTTCTTCCCAGCGGGTGTGCGTTGGTGGCTGGCGGGGACCCCCCACAGGAACTAGGTCTCAGGCTGTGGAAAGGGAGCTGCCCCAGGGCCCAGGAGGGCCGGCTCTGCATTCCGCATGTTCCCAGAGTGAAAGAGAATGAGAAGGAGACACACAAGTGCTGTTATGACCTGGGTTGTTGGTTGGCAAATACAGCATCTAATAGAAACTTTCTTCCATCCCAG
Seq C2 exon
AATACCCTCTACCATCTGCTTTGGTCAGGGTGCCGCTCGAGGATTTAAAAGCAACAAGAAGAAAACCAAACAATGCTGATAGACTCAGAAAAGGAGTGGGGGGCAGTCACCACTGCTGGGCGTGGCATCCGCCTTGGGCCTTTCTCCGACCTTCTGGTGTGGCCGCCCTGGGGGCCAGGCCCTCGCCATCCTCCCCATCCTTGTTCCTCAGCAAATGGCATTAGCAGCTGTCATCAGAAGCTGTGAGGGACCCACAGATTTTGGAAACGACCTGGACACACTATTGGGAAGGAGATGTGGACGGCCTGTCTCCTCCTGCAGGGCCCACCCTAAGAATGTATTTTTAAACACATGAAATAAGTATTTTTCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-ZNF511:NM_145806:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGGAGAGCGGTCAGAA
R:
ACAGCTTCTGATGACAGCTGC
Band lengths:
345-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)