GgaINT0040850 @ galGal3
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
NA
Coordinates
chr6:10490331-10492198:+
Coord C1 exon
chr6:10490331-10490468
Coord A exon
chr6:10490469-10491939
Coord C2 exon
chr6:10491940-10492198
Length
1471 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
AACTGGCGTCTCTGTTCCAGGAT
3' ss Score
9.07
Exon sequences
Seq C1 exon
TGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
Seq A exon
GTCTGAGCCAAATGCCTGCACAGGCAACAGTTTCTGGGGCTGGGACCATATTGTCTTAATTGCATAGTGCAATACCACTCTGGGTGTTTTGTGCTGGGGATAGAAGAGGTGATATTTCTATTTATTTTTGAAAAGCCCTTTTAAAAAAGAAAAAAGTATGAAGAAAAAAAGAGTGAGCGTATACTGCAGAGCTTTGTCAGCAGGTTGTTGCTGTTGCTCTGCCAGCCCCTGGTATGTTCCCAGGGTACTGCAGAGTGATATTGGTCTGAAGATAAACTGCTGGAGTTCAAGCCCCAAAACACAAACACATGTGTTTCCTGCTTTGTAACATTTTCCCATCCTAGCTAACTTTCCCAGGAAACTGACTGCAGCTTCCTGTGCTCCCATGGGGTCACAGAACAAGGCACAAGCATAGCAGGTCGACGCCTTAATTCTGAATCATACATTCTGCAAAGTCAGGTCAGCATTGCTGTGCTTTCTGATTTTTTTTCACAAAAAGTTGAAAACAAACTGCCTGATGCTGGCTTCGCTTACAAAGTCCTCTTCATCATGTACCATAAAACCTGGACAAGGTAGTATGTGATCAAAAAGTCTCTGAAGCAGCACCTGAATCATTGTCATTTATTGATCACTTTAATGGCCTCTAAGCACGTCATGTTTTTTCTTGAACTATCCCAGTTAGCAAAGGGATGCTTGTACTTTGAGTTTGTCACACCTGAGATGCCAGCGTGGTCCATCCAACAGAAACCTGCCCCTCTGTTTGTCCATGGGGTTACAATGATGCCAAGCAGCTGCCAAGGTGACATTTTAAACTTGACTGCTTTTTCAGGAGTAACAGGTCGTGTGCCATTAAGAAATGCTGTCCTGAATTTGACATGACCCTCCTGGTTACTGAAAGGCCACACTTTTCTTATTCTGCTCTCTGCAATCATACACTTCTGTAAAAATAACACTGTAACTTCCCAGCAGCATGTTATGTTTTCCCCGTTGTGAAGAGAGATGAGAGGCCTCCAGCACATAAATGTGCCCCATCAAATGTGGAAAAGACGACCAGCATTTCACCTGTATTTTGAATTGGCATTGGTGATTTAGACTCTGGGAGCCTGAAGCCATGCAAGGTGTAAAACATCCCAATGCTCCTGTAGGTGGTGGGGTGCTAAGGGATGTGTGGGGTGTGTGTGTTGGGAAATGGGCCAATGCACAGAGCTTGTCCAAGCAAATCGGTGTGCGGCCAGACCTTTGCACTTGCAGCTTATATCTTGGAGAGATTAGTTAATTTTGTATTAGTATCAAGTTCCCCAAAAGATTATTCTTTTACCTCCAGCACCATTGCCTTGCATTCCTGGGCTAAGTCGGCTTTGTCTTATAAAGCATGACTGTTGCTGCTAGTTGACTGGTCACGGCAGGACTTCTGCTGATAACAGAGGGCAGAGATCTCACAAACGCCTGTTAACTGGCGTCTCTGTTCCAG
Seq C2 exon
GATCCCATCCACAATCTGCTTCGGACAGGGTGCCACCCGAGGATTTAAAGGCCCACGTAAGAAAGTCTGAACGTCAGCACAGCAGATTTACGCAAGACAGACACCAGCAATTGTTATCAAAGCCACTGTGTCCAAGCAGGAACGTTTGCTGCTGCATGCAAGGATCTGCTCCGTCATGGGCAAGTAAAAAGGAGAGGAGTGGTGCAGTTCAGGATATATAAATGCCTCAGGAGGTGCTTTGCCACAGTCCCTTTGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGATGTCAGCGTGGAG
R:
ACTGCACCACTCCTCTCCTTT
Band lengths:
342-1813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]