DreINT0181452 @ danRer10
Intron Retention
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24534884-24535320:-
Coord C1 exon
chr13:24535156-24535320
Coord A exon
chr13:24535051-24535155
Coord C2 exon
chr13:24534884-24535050
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
GATTATTATCTTTCCTTCAGAGT
3' ss Score
9.22
Exon sequences
Seq C1 exon
AACAACAGAAAAAAAGACTCAACAGAAGAAGGATGCACATATGGAAGTTTCTGCAACCGTTCTGCAACAAGAAAGCTCTGAGTCCATGGATTTTTCGCTGACCCCAGAGCCTGTGGAAACAGAACCAATGCAGGCAGCTAATCTAAAACCACGATACTCATACAA
Seq A exon
GTGGGTGGATTCTAGGTCATGGATTAATATAAATACTTGATTAAGTTTCATTACCCTGTAGACTCAGTGATCAGAACTATCTGTTGATTATTATCTTTCCTTCAG
Seq C2 exon
AGTTCCATCATCCATTTGTTTCGGTCAAGGCTCAGTCAGAGGCTTCAGAGGAAGGAGGAAGAAATAGGCCAAAGCTTTTCTTCATCGCTAACAGCTCACCACATGAGCTCAGTAAAGCATTTGTTTGTTGAGAGCTGTATTTTTATAATAAAAATCATGAAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760:ENSDART00000000831:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=NA C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTTTCTGCAACCGTTCT
R:
TGCTTTACTGAGCTCATGTGGT
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]