RnoINT0168303 @ rn6
Intron Retention
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212362514-212363668:+
Coord C1 exon
chr1:212362514-212362633
Coord A exon
chr1:212362634-212363318
Coord C2 exon
chr1:212363319-212363668
Length
685 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGACTGCTTTTCTGTTCCAGAAT
3' ss Score
10.82
Exon sequences
Seq C1 exon
CCCAGCCATGCCAGCTGCTGCAGACACAGCAGCCAGAGCCCTGAGAGATGACAGCGATGCCATGGAGGTCTGCTTGGAACCTGCTGCCCCACCTCCCTGCAGAAGGACCTACAGTCACAG
Seq A exon
GTCTGTGCACATCTTCCTGTATAACCCTAGGCTTGAAAGTGGGCGACACTGGGCAGGAAGATGTGCTTCATCGCAGGTGACACCCTAAATATTCTAGTTTCCCTCCCTTTGCTTTGGATCCTGGAGCCCAGCATGTAGACACACACACACACACACACACACACACACACACACACACACACACGATGACACTGTCATCTGCTGGGTGGAACTGACGACCTTCTCCCACACTTGCCTGCCAGATAGTCTTCCTCAGATTGAGCTAATATCAACTGTTATTTTGGGACATGTATGTCCCTCAGTTGCCTTCCAGCCGCCATCTTCCCACAGTTTTTTGGACCTTGGCCTGTGAGTACCCTGCCTGCCTGTAGTGATTAGATTTCAGCAATGTAGCTAACAGGAAACCATTGCAACAGGAGCCCCGGCAGGAGCCGACCTTGCTGGCTAATTTCTTCTAAGCAAATGTATGGTGGTACCAGGAAGCCATCCCACAGGAAGTAGGTCTGAGACCAGGAGCTGATCCTAGGACCCAAGAGGGCAGACCCTGTTTCCTGAGTGTCCCACAGAGCCCAAGGAGAACATTCCAGAATACAAATGTGAAGGAAGTACAAGCTGCTGTTGTAAGTTTGGCTGCATGTTGTCAGAAGTAATGCCATTGTTTAATATGACTGCTTTTCTGTTCCAG
Seq C2 exon
AATACCTTCTACTGTCTGTTTTGGCCAGGGTGCAGCCAGAGGGTTTAAAAGCACCAAGAAAAAAAACAAACACCACTGATGGATCCAGGCTAGGAAAGCCAGACAGACTTTCAGGGAGGGGTGTGCCAGGGCCTTGCTTCTGGATCGATGCCCTGAGCTGGACCCTTGCCACCTCCTTATTTCCATCTCTGGTCACTTGAAACAACCAGTGTGAAGAAACCCAGGATCTGCAGATTCCAGAAATAACCAGGAACACTGAAGGAGGGAGGTGGAGAGACCACTTACCTGCTCTGCAGTACCTACTCTAAGAATGTCACTATGAGCACATGTAATAAATTCTTTTTCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272:ENSRNOT00000046314:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCCTGAGAGATGACA
R:
TCCCTCCTTCAGTGTTCCTGG
Band lengths:
355-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]