GgaINT0040850 @ galGal4
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8906912-8908626:+
Coord C1 exon
chr6:8906912-8907091
Coord A exon
chr6:8907092-8908562
Coord C2 exon
chr6:8908563-8908626
Length
1471 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
AACTGGCGTCTCTGTTCCAGGAT
3' ss Score
9.07
Exon sequences
Seq C1 exon
TGGTGCCAAGCATGTGAGCTGTCCCACAGATCATGACGGGAGTGTGCTGATGGATGTCAGCGTGGAGACCTCAGAGCAGCTCCAGGCAGACCACATGGAAGTGGTGCCCAGTGAGAACATGGAGGTCCCTCAGCCTGCAGCTAGCCCTTCACTACCAGAGAAACGTCTCTATAAATCCAG
Seq A exon
GTCTGAGCCAAATGCCTGCACAGGCAACAGTTTCTGGGGCTGGGACCATATTGTCTTAATTGCATAGTGCAATACCACTCTGGGTGTTTTGTGCTGGGGATAGAAGAGGTGATATTTCTATTTATTTTTGAAAAGCCCTTTTAAAAAAGAAAAAAGTATGAAGAAAAAAAGAGTGAGCGTATACTGCAGAGCTTTGTCAGCAGGTTGTTGCTGTTGCTCTGCCAGCCCCTGGTATGTTCCCAGGGTACTGCAGAGTGATATTGGTCTGAAGATAAACTGCTGGAGTTCAAGCCCCAAAACACAAACACATGTGTTTCCTGCTTTGTAACATTTTCCCATCCTAGCTAACTTTCCCAGGAAACTGACTGCAGCTTCCTGTGCTCCCATGGGGTCACAGAACAAGGCACAAGCATAGCAGGTCGACGCCTTAATTCTGAATCATACATTCTGCAAAGTCAGGTCAGCATTGCTGTGCTTTCTGATTTTTTTTCACAAAAAGTTGAAAACAAACTGCCTGATGCTGGCTTCGCTTACAAAGTCCTCTTCATCATGTACCATAAAACCTGGACAAGGTAGTATGTGATCAAAAAGTCTCTGAAGCAGCACCTGAATCATTGTCATTTATTGATCACTTTAATGGCCTCTAAGCACGTCATGTTTTTTCTTGAACTATCCCAGTTAGCAAAGGGATGCTTGTACTTTGAGTTTGTCACACCTGAGATGCCAGCGTGGTCCATCCAACAGAAACCTGCCCCTCTGTTTGTCCATGGGGTTACAATGATGCCAAGCAGCTGCCAAGGTGACATTTTAAACTTGACTGCTTTTTCAGGAGTAACAGGTCGTGTGCCATTAAGAAATGCTGTCCTGAATTTGACATGACCCTCCTGGTTACTGAAAGGCCACACTTTTCTTATTCTGCTCTCTGCAATCATACACTTCTGTAAAAATAACACTGTAACTTCCCAGCAGCATGTTATGTTTTCCCCGTTGTGAAGAGAGATGAGAGGCCTCCAGCACATAAATGTGCCCCATCAAATGTGGAAAAGACGACCAGCATTTCACCTGTATTTTGAATTGGCATTGGTGATTTAGACTCTGGGAGCCTGAAGCCATGCAAGGTGTAAAACATCCCAATGCTCCTGTAGGTGGTGGGGTGCTAAGGGATGTGTGGGGTGTGTGTGTTGGGAAATGGGCCAATGCACAGAGCTTGTCCAAGCAAATCGGTGTGCGGCCAGACCTTTGCACTTGCAGCTTATATCTTGGAGAGATTAGTTAATTTTGTATTAGTATCAAGTTCCCCAAAAGATTATTCTTTTACCTCCAGCACCATTGCCTTGCATTCCTGGGCTAAGTCGGCTTTGTCTTATAAAGCATGACTGTTGCTGCTAGTTGACTGGTCACGGCAGGACTTCTGCTGATAACAGAGGGCAGAGATCTCACAAACGCCTGTTAACTGGCGTCTCTGTTCCAG
Seq C2 exon
GATCCCATCCACAATCTGCTTCGGACAGGGTGCCACCCGAGGATTTAAAGGCCCACGTAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCCAAGCATGTGAGC
R:
ACGTGGGCCTTTAAATCCTCG
Band lengths:
238-1709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]