BtaINT0165612 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25938181-25939305:-
Coord C1 exon
chr26:25939171-25939305
Coord A exon
chr26:25938498-25939170
Coord C2 exon
chr26:25938181-25938497
Length
673 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTGGACGTTTTCCGTTTCAGGAT
3' ss Score
10.31
Exon sequences
Seq C1 exon
CCCAGCCTCGCAGGTGTCGACAGAAGCCATCGGGGAGGACTGGGCACCCTCTGAAGGAGACGCCATGGAAGTCTGCTCTGAACAGGCAGAGGCCCACCCAGAACCTCCAAGAGAGAGGCGGGTCTACAGCCACAG
Seq A exon
GTCAGTACCTGGCCCCTTTCTGAACCAGGTTCTGAACTTCTGCTTCTGGAGAATTCTGGGTTTGATGCTTAGCGTCCCCACTGAGAGAAGCCATACTGGGTTGGAGTGTTGGCTTCAGGGGGAGATGAAAAGCCTGAACCCCCCGCTGCCCTTGGGTGACCTGGAGCCCTGGGAGCACAGCCTACCCTGACCGCAGCCTAGGCGGGGATGGAAAGACGCAGGATGCGACTGCCCAGGTTACAACTACCGCCTGTCTTTCTAGTGCTAATGCTGTTTTTGTTGGATTAATTTGATTTCAAGTCTAATTTGGGGGTCAGTGTTGGAGAAATGGAAAAAACGACCAACAAGCCCACCCCGTCTGAGGGAGGACCTGGAGGCCCTTTGCGGCCGGCTTGCGGGTGTGGTCACTCTGGCCTAACAGTGAGCCGGGCCCGGTGGGAGAGCAGGGCGGCGGTCTCAGGCTCCACGGGGGACGGGCACAGGGGGCGGAGCGCGGCCGCGGTGGCCTCGCTGGACGCAGGAAGCGCCCACCTGAAGAGCCCGTGGCCGCCCTGCGGTCCGCTGGGGAGGAGGGAGCATCGGAGCGGCAAGTCAGGCCCCAGGAGACTGCTGCCACATTGAGCCACCCGTGGGCGAAACCGCAGCGGCTTCCTGTGGACGTTTTCCGTTTCAG
Seq C2 exon
GATACCGTCGACCGTCTGCTTCGGGCAGGGCGCCTCTCGAGGATTTAAAAGCACCAAGAAGAGAAGCAAGCGCCAGTGATGGTGGAGCCCGGGCCGGGAATAGCCAGCTGACCGAGGCCGTGGGGGATGCGCGGGTTCGGGGAAGGGACCCCTTGTGGGTGACCAGGGTGCGGAGAGCAGCCGCTACCCCGCACAACGCCCTTTGGAGACACGTGGGGTAAACAGTTTTCCTTGAGTGCTGTAAATAGTTTGAGAGGCATGGAGTAAAGGGCCTTCATTTACATTGAGTGAATGGTCAGCCTTTTGTGCTGGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416:ENSBTAT00000016475:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCTGCTCTGAACAGGC
R:
GAAGGCCCTTTACTCCATGCC
Band lengths:
345-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]