HsaALTD0007459-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135125225-135126662:+
Coord C1 exon
chr10:135125225-135125320
Coord A exon
NA
Coord C2 exon
chr10:135126292-135126662
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GAAACTTTCTTCCATCCCAGAAT
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCTCAGCAGAAGCCCCAGGGGACAGTGGAGAGCGGTCAGAAGGGGAGGCCATGGAAATCTGCTCTGAGCCTGTGGCAGCCTCCCCTGCACCGGCAG
Seq A exon
NA
Seq C2 exon
AATACCCTCTACCATCTGCTTTGGTCAGGGTGCCGCTCGAGGATTTAAAAGCAACAAGAAGAAAACCAAACAATGCTGATAGACTCAGAAAAGGAGTGGGGGGCAGTCACCACTGCTGGGCGTGGCATCCGCCTTGGGCCTTTCTCCGACCTTCTGGTGTGGCCGCCCTGGGGGCCAGGCCCTCGCCATCCTCCCCATCCTTGTTCCTCAGCAAATGGCATTAGCAGCTGTCATCAGAAGCTGTGAGGGACCCACAGATTTTGGAAACGACCTGGACACACTATTGGGAAGGAGATGTGGACGGCCTGTCTCCTCCTGCAGGGCCCACCCTAAGAATGTATTTTTAAACACATGAAATAAGTATTTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-6-7,7-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGGAGAGCGGTCAGAA
R:
TTTAAATCCTCGAGCGGCACC
Band lengths:
125-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)