RnoALTD0034575-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81137511-81144021:-
Coord C1 exon
chr1:81143935-81144021
Coord A exon
chr1:81143888-81143934
Coord C2 exon
chr1:81137511-81139602
Length
47 bp
Sequences
Splice sites
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
3' ss Seq
AATTCTCTTTATGTTTTTAGGAG
3' ss Score
8.23
Exon sequences
Seq C1 exon
ATGGTGACCTTTAGGGACGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTACGGAGAG
Seq A exon
GTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGGGTGAGGATGG
Seq C2 exon
GAGGCAAGAATCTAGAAGACACGGAGTCTCTCGAGGAGGTGGGACTGAGGCACCTGCCACACGAGGAACTTTTCTGCTCACAGATCTGGCAGCGAGTTATAAGGGAGTTAGCCAAGGCTCGAGATTGCAGAGTACGTGTCGGAGAACATGGCTCTCCGGTGAAACGAGACAATCGTGACGACGAGGAGTACAGCAAACATTCCAGTCAGAAATCACGGCTCCGACTCCACTGCGGACTAAATGGTGGTGAAGAACCTGACAGAGAGGAGAGGAGTGAGAAAGACTCCTGGGACTCTCGCCGTCAGGCCGATGGGCGATCCCCTGTGGGAGAGAAGAGGTATAGATGTGAAAAATGTGACCTGTCCTTCTGTCGGTTATCGGGTCTCCAAGCCCATCAGGTGAGGCACACTGGAGAGAAACCCTACAAATGTGAGGAGTGTGGCAAGGGCTTCACTCGGGCCTCCACTCTTCTGGACCATCAGAGAGGCCACACTGGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416-7-9,8-9,9-9-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAAGCTGTACGGAGA
R:
TCTCGAGCCTTGGCTAACTCC
Band lengths:
146-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]