RnoEX0101564 @ rn6
Exon Skipping
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81130389-81149578:-
Coord C1 exon
chr1:81149442-81149578
Coord A exon
chr1:81137901-81139602
Coord C2 exon
chr1:81130389-81132292
Length
1702 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTTATGTTTTTAGGAG
3' ss Score
8.23
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAGGAGAAGATTGTCTCCAGCTTGGTGTCAAGGATGACTGTCCTATTTCATGGCTTCTCTCCTTCCACAGCCTGACCTCTCGACAAGGACTGAGTGGAAGGTGAGGTCGTGACTCCTTCATTCAGCAAGGCTCCTG
Seq A exon
GAGGCAAGAATCTAGAAGACACGGAGTCTCTCGAGGAGGTGGGACTGAGGCACCTGCCACACGAGGAACTTTTCTGCTCACAGATCTGGCAGCGAGTTATAAGGGAGTTAGCCAAGGCTCGAGATTGCAGAGTACGTGTCGGAGAACATGGCTCTCCGGTGAAACGAGACAATCGTGACGACGAGGAGTACAGCAAACATTCCAGTCAGAAATCACGGCTCCGACTCCACTGCGGACTAAATGGTGGTGAAGAACCTGACAGAGAGGAGAGGAGTGAGAAAGACTCCTGGGACTCTCGCCGTCAGGCCGATGGGCGATCCCCTGTGGGAGAGAAGAGGTATAGATGTGAAAAATGTGACCTGTCCTTCTGTCGGTTATCGGGTCTCCAAGCCCATCAGGTGAGGCACACTGGAGAGAAACCCTACAAATGTGAGGAGTGTGGCAAGGGCTTCACTCGGGCCTCCACTCTTCTGGACCATCAGAGAGGCCACACTGGAAACAAGCCCTATCAGTGTGGCGCTTGCTGGAAGAGTTTCTGTCACAGCTCGGAGTTTAACAATCACATACGAGTCCACACGGGAGAGAAACCCTATGTATGTGAGGAGTGTGGGAAAGGCTTCAGCCAGGCCTCCCATCTTCTGGCCCATCAGAGAGGCCACACGGGAGAGAAACCCTACAAATGTAGCACGTGTGGGAAGGGATTCAGCCGGAGTTCAGATCTTAACGTTCATTGTAGAATCCACACAGGAGAGAAACCCTATAAATGTGAGAGGTGTGGTAAAGCCTTCAGTCGAGTCTCAATTCTCCAAGTGCATCAGAGGGTCCACAGTGAAGACAAACCGTATCAGTGCTCAGAGTGTGGGAAGGGCTTCAGTGTAGAGTCTCACCTTCAAGCCCACCAGAGGTCCCACACTGGAGAGAGACCCTATCAGTGTGAGGAGTGTGGGAGAGGCTTCTGTCGGGCGTCCAACTTTCTAGCTCATCGTGGAGTTCACACAGGAGAGAAACCGTATCAATGTGACGTGTGTGGGAAACGCTTCCGGCAGAGGTCCTACCTCCACGACCACCACAGGATCCACACGGGAGAGAAACCGTACAGATGCGAGGAGTGTGGGAAAGTCTTCAGTTGGAGCTCATACCTCAAAGCCCACCAGAGAGTCCACACGGGAGAGAAACCGTACAAGTGTGAGGAGTGTGGGAAAGGCTTCAGCTGGAGCTCAAGCCTCCTGATTCACCAGCGAGTCCATGCTGAGGACGAGGGACGCAGAGATTTCCCTGCGTCAGAAGGCTCACAGGGGAAACAAACTCTATGATGTTTTATATTTTGGAATTTCAAATTGGAAGCTGAAAGGTCCCAATTCTTAGAGTTCTCAAGGCAGACAAAGGAGTTGTAGGATCCGTATTTGATTGGAATGGGAGGCTTGGGAGACCACACATAGAGAAGCCTTGTAAGTTGGAGCTATGTAGACTTTGGTCAGAACCTTGACCTTTAATCCACGGAGACAGGAACTGTGGGAAGGTGGAGTGTGACCTGCAGGTCCCTCAACGGAAGGGACCGGATCTGTTCCACAGGAGCAACGTTCTTACACTGCTGATTGCGGCCACACGTGGGGCTTCATAACTGTAAGCGACAGTCACGGGATATTTAGGGACGCTACAAGCTTTCTGCACATCCAGTGACCAAAACCTCAGAATTCATCAG
Seq C2 exon
CAGATATATGAAGGGATGCAAGTGCAATGGAAGAACTAAAAGACCATCTCATTAAGAGAGTTGAATGTTTGAAGAAGAGGGCGAAGACTGTTCAGAATCGTCAGCCGATGCTTAAAATAGCAAGTCAGCTTTGAGTTGAGAAAGAGAAGAATTTCTTGCACAACAGAAACAGGAGAAAAGGAATCAGCCATTCGCGTGGTGTAGAGACTGTAAAGAGGTTGGAGCCAGCTGACAAGAATGTGGCGTGCGGCAGCGGGCAGAGGCTAGAGGAGACACAATTAGTTCATATGTGGTCACTGAAAAATTCCCCAAATAATTAGCAAGAAGCAAGAATTACATTTGTTTGTTTATTCATTCATTTATTTTTATGTCGAAAGTGGTCCACAGTGACTATCTCCAACTTAAGTCTGAAGTCAGTGAAATAAACACGGAGATCAGTTGCTTGAAAAGAAAACGATGAGAAGCGAGCCAATTAACTAAAGGCAAGCTCTCACTGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416_MULTIEX1-4/11=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.194 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCTCTCGACAAGGACT
R:
TGTGTCTCCTCTAGCCTCTGC
Band lengths:
343-2045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]