RnoEX0101560 @ rn6
Exon Skipping
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81143898-81149578:-
Coord C1 exon
chr1:81149442-81149578
Coord A exon
chr1:81147255-81147369
Coord C2 exon
chr1:81143898-81144024
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCGTCTCTTTTTGTCTTTAGAAG
3' ss Score
8.89
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GAAGGAGAAGATTGTCTCCAGCTTGGTGTCAAGGATGACTGTCCTATTTCATGGCTTCTCTCCTTCCACAGCCTGACCTCTCGACAAGGACTGAGTGGAAGGTGAGGTCGTGACTCCTTCATTCAGCAAGGCTCCTG
Seq A exon
AAGCAACAGAGAGATAAGGCTTGGGATGCCGGCTGTGGAATGAGTCTGGGTGCTGGGACCCCCACCTGCCTCTGCCCTCACCGGTGCGTGGGTACAACAGCTGCCATCTTTGTTG
Seq C2 exon
GAGATGGTGACCTTTAGGGACGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTACGGAGAGGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416_MULTIEX1-1/11=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTCCAGCTTGGTGTCAA
R:
GCAGCATCCTGAAGTTCTCCA
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]