BtaEX0041327 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52429558-52437153:+
Coord C1 exon
chr18:52429558-52429587
Coord A exon
chr18:52436837-52436997
Coord C2 exon
chr18:52437081-52437153
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTTTTTCCCCTAGAAG
3' ss Score
10.03
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATTGCGATTGCGGCCTTTGGTTCTCACAG
Seq A exon
AAGCAACAGAGATACAAGATCTAGAAGATTAGCTCCTTTGTGAGAGTGGATTCAGGTTCCTCCCCACCTCTTGACCTCACCGAGCCTTGGCTTCCTCGTCTGTTACGTGGAAACAACAGTCATGACCATCACCATTTACTGAGAACTTTCTAAAATGCCAG
Seq C2 exon
CTGAGGAGAGGCACAGAGGTGGAGGTGATCAGACCAGCGTCACACCACTCGTACGACACTAGATTCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263-'0-4,'0-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGCGGCCTTTGGTTCTC
R:
CTGTGAAGAATCTAGTGTCGTACGA
Band lengths:
98-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development