HsaEX6095509 @ hg19
Exon Skipping
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:13111]
Coordinates
chr19:44428390-44429610:-
Coord C1 exon
chr19:44429477-44429610
Coord A exon
chr19:44428554-44428713
Coord C2 exon
chr19:44428390-44428462
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTGCTTATTTTTGTCTTTAGAAG
3' ss Score
7.87
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
AATCAGAATCATACCCTGAGAGCTACAAGAACTCCATTTTTCACTGTGCAGAGGCTCTCTGCTGAAGGGTCAAGTGGAATCTGGAATCCAGCCCATGTTTCCCCATCATCAAGCCATGTGAAGCTGCAGACTCC
Seq A exon
AAGCAACAGAGAGACAAGATTTAGAATACTGGCTCTGGTATGAAAGCTGGATTCAGGTACTGTTCCTGCCTCTTGACCTCACCAAGCCTCAGCTTCCTCGCCTGTTAAATGGATACAATTGTCGTCATTATCATCTGTTGAGAACTCCCTAAAATGCCAG
Seq C2 exon
CTGAGCATAGGCACAGAAGTTTAGGTGTTTGGACCAAGGTCACACAACTGATACAACAGTAGCTTCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATCATACCCTGAGAGCT
R:
TGTGAAGAAGCTACTGTTGTATCA
Band lengths:
204-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)