RnoALTD0034625-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016186 | Zfp709
Description
zinc finger protein 709 [Source:RGD Symbol;Acc:628698]
Coordinates
chr16:19634134-19637592:-
Coord C1 exon
chr16:19637532-19637592
Coord A exon
chr16:19637452-19637531
Coord C2 exon
chr16:19634134-19636654
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTTTTTTTCTTTTTAAACAGAAA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GAAAAACACAAGAAGACCAGAACATAGATGATGACCATAGATATTCTAGAAGAAATCAAAG
Seq A exon
GTAACTTTACCAACTCATGATAACGTAGCTCAAGAATCTGGAAATGGCCAGTAGTTTTTAAAGTCAAGACAACTATCCAA
Seq C2 exon
AAATGGAGTTGTGGAAAGACTGTTGGAACACCGCAAAGGCTGTGAGTGTAAAGCAATCTTCAGACAGATTCCGGACACCACAGGAAACAGGAAAACTTCTCACAGGACAGTGCTTTGTGAAAACCATGTGTACAAGGACAACATGCTCATCAGTCACGCATCTCTTAATGTATCTGTACCTCTTCAGACTGCACACAAACCTCCCGCCTATGAGCTCTGTGGAGAGAACCTGTATACATTTGGAGAATGTGAGAAAGCCTTCATTTATCCAGAATGCCTTCTGAAGCATGAAGACAGTGACAGCAGACAGAGATCCTGTGAGTTTAACCAGTGTGGGAAAATCTTCAAAAGTAGTGATCACATTCAAATGCGTGTTAGTGATGAAACTAGGGAGGAAATGTGCATAAGTAAGCAGCATGGCGATGCCTTTCCTTACCCTGATTTTCTTCAGTATGTTGAAAAGATCTACACTGGGAAAAAACCCTATGCATGTAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016186-9-5,10-5,11-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF079757=C1_4=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGAACATAGATGATGACCA
R:
TCACAAAGCACTGTCCTGTGA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]