RnoINT0168612 @ rn6
Intron Retention
Gene
ENSRNOG00000016186 | Zfp709
Description
zinc finger protein 709 [Source:RGD Symbol;Acc:628698]
Coordinates
chr16:19634134-19637599:-
Coord C1 exon
chr16:19637532-19637599
Coord A exon
chr16:19636655-19637531
Coord C2 exon
chr16:19634134-19636654
Length
877 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTTTTTTCTTTTTAAACAGAAA
3' ss Score
10.2
Exon sequences
Seq C1 exon
ATCCTAGGAAAAACACAAGAAGACCAGAACATAGATGATGACCATAGATATTCTAGAAGAAATCAAAG
Seq A exon
GTAACTTTACCAACTCATGATAACGTAGCTCAAGAATCTGGAAATGGCCAGTAGTTTTTAAAGTCAAGACAACTATCCAAGTAAGCCCAACTTCAAGGTGATAAATTTAAAGCATTTCTCTCTCTAAAAGGTGCATATAGAATTGGAAATGTTTACAGTATTGACTTGGCGGTGCAAGTGATACTTTCTAATGGTTTCATCAACACAAACTTGTATCCAAGCACAGAGTTAATGAAAAATAACATGTGTACCTTCCTTCAAGCTTTGAGTATGGAATATTAAGAAAATATAAAGGAACTTTATGTTTACTCTGGGGACAATCTTTAAGAAATCTTATGTATACAAAAAATTTTAAATAGAAAATAGTTTTTGCTTCAGTATTTTGCATAAGGAATACTCAAGTGCCTGGATATAGAGGCAAATATAAGCCTAGCTACTAGGAGTTGAATTTGAAGGTAGCAAGACCTCAAACATATATAAGACTTAGATATTCATTGTTTCCAAAATAGTTAACCTGTCAGAAGTATTAGGAAGTCCCATACGATTAGGCTAACAAAATGACTCATCAGGTAAAGGCGTTCACTGCCAAGTTTGACCTGAGTTCAGTCCTTGGGACCCATACAGCAGAAGAAGAGAACCAGCTCCGACAAGCTGGACTCCTACTTCCACATGCCCACCATAGCACGTCCACACACACATAGCACATAACAGATGTTAACACAAAAAGAAATCCTATATGAATACAGTATCTTAATATTACCTGTCTCCGCATCTTAGAGAACCTTTAATCATATTCGAAAATTCTCGGGAATTCTGCTGGTAGGGAATTTATAACTTTATTGGTATACTTTCCTTTTTTTTTTTTCTTTTTAAACAG
Seq C2 exon
AAATGGAGTTGTGGAAAGACTGTTGGAACACCGCAAAGGCTGTGAGTGTAAAGCAATCTTCAGACAGATTCCGGACACCACAGGAAACAGGAAAACTTCTCACAGGACAGTGCTTTGTGAAAACCATGTGTACAAGGACAACATGCTCATCAGTCACGCATCTCTTAATGTATCTGTACCTCTTCAGACTGCACACAAACCTCCCGCCTATGAGCTCTGTGGAGAGAACCTGTATACATTTGGAGAATGTGAGAAAGCCTTCATTTATCCAGAATGCCTTCTGAAGCATGAAGACAGTGACAGCAGACAGAGATCCTGTGAGTTTAACCAGTGTGGGAAAATCTTCAAAAGTAGTGATCACATTCAAATGCGTGTTAGTGATGAAACTAGGGAGGAAATGTGCATAAGTAAGCAGCATGGCGATGCCTTTCCTTACCCTGATTTTCTTCAGTATGTTGAAAAGATCTACACTGGGAAAAAACCCTATGCATGTAAACAATGTGGGAAAACCTTTTCTTTTTTGAGCAACATTAGAAGACATGAACGAACTCACACTGGAGAGAAGCCGTACAGATGCAATACATGTGATAAGGCTTTCACTTGTTTGACTAACTTTCAAGAACATGAAAGAACTCACACTGGAGAGAAACCCTATTTATGTACACAATGTGGTAAAGCCTTTTCTTTTCTGAGTAACATTCGGAGACACGAACGAACCCACACTGGAGAGAAGCCGTACAGATGTAATATCTGTGGTAAGGCTTTCAGTTATTTGACAAACTTTCAAGACCACGAGAGAACTCACACTGGAGAAAAGCCTTACGTGTGTACGCAGTGTGGGAAAGCTTTCACTTACTACTATTCCTTTCAGACACATAAACGATGTCACACCGGCGAAAAGCCTTATGTATGCAAGCAATGTGGGAAAGCCTTCAGTTATTACAATTCCATTCAAACACATAAGCGTTGTCACACCGGAGAGAAGCCCTATGTATGTAAGCTGTGTGAGAAAGCCTTCACTACCCTCAGTTCTCTTCGATATCATGAGAGGATTCACAGTGGCGAGAAGCCCCATGTATGTTTGCAATGCGGGAAAGGTTTCAATTCTTCTAGCACCCTCCGAATTCATGAGAGAACTCACACTGGAGAGAAACCCTATAAATGTAAGCAGTGTGGGAAAGTCTTCAGTGTTGACAGTTCCCTCCGATGCCACGAAAGGATTCACAGTGGGGAGAAGCCCTATGTATGTAAGCAGTGCGGAAAAGCCTTCACTCGTCATACCTCCCTTCGGTGCCACGAAAGGATTCACTGTGGGGAGAAACCCTATAAATGTAAGCAATGTGGGAAAGGTTTCATTTCTTCCAGTAACTTTCGAAAACATGAGTGGACTCATTCTGGAGAGAAACACTGTGTATGTAAATTGTGTGGTAAAGCCTTCACGGGTCATAGTTCACTTCGACGCCACGAAAGAATTCACAGTGGAGAAAAGCCCTATGTATGTAAGCACTGTGGGAAAGGTTTCTCTTCTTTGAGTGGCTGTCAGAGACATGAACAAATTCACACTGGTGAGAAACCCCATGTATGTAAGAGTTGTGGGAAAGCCTTTACTAATCCCAGTGCCCTCCGAAACCATGAAAGGATTCACAGTGGTGAAAAGCCCTGTATATGTGAGCAGTGCGGGAAGGGTTTCATTTCTTTTAGTAAGTTTAGAATACATGAACGGATTCACACTGGAGAAAAACCGTACAAATGTAAGCAATGTGGAAAAGCCTTCACTGGTCACAGTTCCCTTCGACGTCATGAAAGGATTCACAGCGGGGAGAAACCTTTTGTATGTAAACAGTGTGGGAAATCCTTTTATACTTTAAGTGATTGTCAAAGACATGAACAAATTCACACTGGTGAGAAACCTTTCATTTGCAAGCAGTGTGGGAAAGCTTTTACCCGGTCCAGCTCCCTTAAAATACATGAGAAGACTCACAGTAGAAGAAATTCCTAAGTGTAGAACACGTCATTCTTAGCATGACAGTGCGTAGGGCAGAGAACCAGGGCCATGTTGTCTGTAGGAATGCCTCTAGTCATCTTGGTGGTAGTCACAAACATAATAGCTCATACCATAGCGGGAAGTTCCCACATGATGTCAAGAGAGACACATACCTTAAACGGATGTATATAGAAGTCTTCAGTTGGCCAACCTCTGAGAAGGTACCCAGTATCAAAAGTTGTTTAACAAAGTTATCAAAACAGTTCACAAAGCTTTATGAAAACCCCTGAAGTAACAGAATTCATTAGTCCTTTTTAAGATCCCAGTGAATAAACATTAAATGGTCAGTAATTCACAAGATAAATCTCTAGAATGTTTACTTCTAATTTTGTAAATAAATTTTCAGGTGACCTAATCTCTGAGCGTCTTTAAGCAGGAAGGTGTGGATTTAATGGGCTGTGTCTTTACACATCATGTCTATTCCTTCTCTTCTTGTGTTGGATACATAGATGTATCCCTGATATGTTTTTAGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016186:ENSRNOT00000021742:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF079757=C1_4=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGAACATAGATGATGACCA
R:
TGCTGTCACTGTCTTCATGCT
Band lengths:
353-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]