HsaINT0187929 @ hg19
Intron Retention
Gene
ENSG00000198551 | ZNF627
Description
zinc finger protein 627 [Source:HGNC Symbol;Acc:30570]
Coordinates
chr19:11725642-11729974:+
Coord C1 exon
chr19:11725642-11725702
Coord A exon
chr19:11725703-11727509
Coord C2 exon
chr19:11727510-11729974
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CTTCTCATTTTTCTGACAAGTCA
3' ss Score
3.56
Exon sequences
Seq C1 exon
GAAAACAATGGGAAGACCAGAACATTGAAGACCCATTCAAAATTCCCAGGAGAAATATAAG
Seq A exon
GTAATTTGCACTCACAAAAGAAAGTTCTGTTCCTTGAGAGCATTTCGTATTGTTAGGAATTTTTTTTTTTTTTTTTTTTAGATGAAGTCTCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGCACGTGCCACCACGCCGAGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTTGTTCTCTTGACCTCGTGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCATGCCCAGCAGGAATTTTTAAAAGCAAGCAAACAACATATAAGCCCAGCTTCAAACTGTTTTGTTTTTAGAAAATCTTCTCCAAGCCAGGCATGGTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACTCCGTCTCTACTAAAAATACAAAAAAAAAGTTAGCTGGGTGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGAACGGCGTGAATTGGGAGGCAGAGCTTGCTTTGAGCCAAGATGGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAGAAAAAAAGAAAATCTTCTCCAAAAACATAGTTAAGTGTAACATAGATGTTCAGTGTTTGCAAAATAGTTCAATTATAGATAGTATTAAGAAACTTCATACGAATATCTTTTTTTTTTTTTTTTTGAGAGGGAATTTCACAACTCGTTGCCCAGGCTGGAGTGCAAGGGTGCCATCTTGGCTCACTGCAACCTCCGCCTCCTGGATTCAAGCGATTCTCCTGCCTGAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCGAAAGTGCTGGGATTACAGATGTGAGCCACCACACCTGGCCATGAATATCATTTTCTTTCTTTCTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGAAGTGCAATGGCATGATCTTGGCTCACTGCACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACACGCGTGCTCCACTGCGCCTGGCTAATTTTTTTTATTTTTTATTTTTAGTAGAGACAGGGTTTCTCCACGTTGGTCAAGCTGGTCTTAAACTCCTGACCTCAGGTGATCCTCCTGTCTTGGCCTTCCAAAGTGCCGGGATTACAGGCATAAGCTACTGCGTCTGGCCATGAATATCATTTTTTGATAATAGGTATGGTTGTGACCTATTGCAGACCATTTAGTCCACTCATGTTCAAACAGTTGAGACAGGCATAAAACGTACACTTTCCCTGGTAATGTTAAACATGTGAATCCAAGGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAGAGGTGAGAGGATCCCTTGAGCCTTGGAGTTCAGGGTTCACGCCTGGGCAACATAGTAAGATTCTGTCTCTGTATTTAAAAACAAGTATATGTAAGTCTAATACCTATTAATAAATATAAAATCATTTATAAACAAAACATTAATAATGTACTTCTCATTTTTCTGACAAG
Seq C2 exon
TCATATTCCAGAGAGACTCTGTGAAAGTAAAGAAGGTGGTCAAGGTGAAGAAACCTTCAGCCAGATTCCAGATGGTATTCTGAACAAGAAAACTCCTGGAGTAAAACCGTGTGAAAGCAGTGTGTGTGGAGAAGTTGGCATGGGTCCTTCATCACTTAATAGGCACATCAGAGATCACACTGGACGTGAACCAAATGAATATCAGGAATATGGAAAGAAGTCATATACACGTAACCAGTGTGGACGAGCCTTGAGTTATCATCGCTCTTTTCCAGTACGTGAAAGGACTCATCCTGGAGGAAAGCCCTATGATTGTAAGGAATGTGGAGAAACCTTTATTTCTCTTGTAAGCATTCGAAGACACATGTTAACGCATAGGGGAGGTGTACCTTACAAATGTAAGGTGTGTGGGAAAGCCTTTGATTATCCCAGTTTATTTCGTATACATGAAAGAAGTCACACTGGAGAGAAACCTTATGAATGCAAGCAATGTGGGAAAGCCTTCAGTTGTTCCAGTTACATTAGAATACATGAAAGGACTCACACTGGAGATAAACCCTATGAATGCAAGCAGTGTGGGAAAGCTTTCAGTTGTTCCAAGTACATTCGAATCCATGAACGAACTCACACAGGAGAGAAACCCTACGAATGTAAACAGTGCGGTAAAGCCTTTAGGTGCGCCAGTTCTGTTCGAAGTCACGAGAGGACTCACACCGGAGAGAAACTTTTTGAATGTAAGGAATGCGGGAAGGCTTTGACTTGTCTTGCAAGTGTTAGAAGACACATGATAAAGCACACTGGCAATGGACCTTATAAATGTAAGGTGTGTGGGAAAGCCTTTGATTTCCCCAGTTCATTTCGAATCCATGAAAGGACCCACACTGGAGAGAAACCCTATGATTGTAAGCAATGTGGGAAAGCCTTCAGTTGTTCCAGTTCGTTTCGAAAACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTACAAAATGTGGGAAAGCCTTCAGTCGTTCCAGTTACTTCCGAATCCATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAGCAATGTGGGAAAGCCTTCAGTCGATCCACTTACTTTCGAGTACATGAAAAAATTCATACTGGAGAGAAACCCTATGAGAACCCTAACCCTAACGCTTCAGTTGTCCCAGTTCTTTCATGAGCATGAAAGGAGTCACATAGAGAAACCCCATGAAAGTAAGAAATTTGGGAAAGCCTTCAGTCCTTTCTGTTTCTTTCAACTACGTGAAAGGATTCACAGTGGAGAAAGACCCTGTAAGATAATTGGCTTTAAATTACGAGAGACTTGTGATAGGACAGTAAAACCTAGAGTTGGAGTTGGATCTCTGGATTGTGTTATGTCAGTGTTGGTAGGTTAGGAACTAGATTTCCCAGAATCCATTCCATTTGTGATTCCATGATACAATTCACCAGTAACCTATCTTACATGAGATTCGGAAGTAAGTTAAGAAGGCATTAGTCATGGTTTGGAAGCACCATACAGGGAGACAGCTGTGTGAATACAGGCTGTATGGACACTTGCTTCCATCCCATTTTCCTGCTTCTTTGGGTTGCCAATCAAGAGTATCCTCAAAACGACTTGACTTTAATTTTCTCGGAGGTGATAGGCTTCCACACAGGTCTCCAGAAGCCCTGCATTGAATATCCATCCACACTTTGGTTTTCCTTCAGACATTATTATGTCTGTACTAGGCAACTAATTCAGACTGTCCTGGTTGGGAATATTCTGTGATGCTCTGACTCCCCTAGTCTGTAGACGGAATTGGCATACGGTCTAATTTGTGTAGTAAGCACCTTTGTTCATACTAGTAGTGACTGTATTCTTGATTCAGCCTGATAGCTACCATGCTGCTGTCAAAACCAACCAGAGGGGAGCTTGTTCTTCTGCTGTAGTGTGCAGTGACTGGCCTCACCCAGGACTTTGATGTGAGAATGAGCACTTTCCTCTATCAGGAAATTTCAAGTGTTTCCTGTTATTCGTAGCTCAATGTAATGCCTCAGTTCATTTTCAGTTGTTTGATTATATGTGACTAATATGTATTTTTTATTCAAACAAGACTTCTGTACATGTTTCTTCAAAACAGTTTATTAACTGTCTTCAGTCTTGGATTACATCAAGTTTATAATTTTGGCAAATTGTTAAGACACTGTGAAGTCAGCGTTAACCATGTGCATACAACTTAAGGAATTTTTTCCTCCTCATGTAAATTTTACTTTTCATGCTTATATAGTTTCAACTTTTATCTTCATAGTAATTTCTCATCTACTCATAATACCAAAAGTTAAGTCATGCTGTTTTGTGTGCTCTCTTGCTAAAGACCGCAGAGACCATACCTGTTGTCAAAGAGGGTGTAATAAACTGTAATAATAATCATGACCACAAACCATAAAGGACTGTGTGATGTATCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198551-ZNF627:NM_145295:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF0202611=RyR=PD(16.0=38.1)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGAACATTGAAGACCCA
R:
AGGGCTTTCCTCCAGGATGAG
Band lengths:
356-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)