MmuINT1035711 @ mm10
Intron Retention
Gene
ENSMUSG00000056019 | Zfp709
Description
zinc finger protein 709 [Source:MGI Symbol;Acc:MGI:2384299]
Coordinates
chr8:71887601-71895727:+
Coord C1 exon
chr8:71887601-71887661
Coord A exon
chr8:71887662-71888919
Coord C2 exon
chr8:71888920-71895727
Length
1258 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTTTTAAAATTTTAAACAGAAA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GAAAAACACAAGAAGGCCAGAACATAGATGAGGACCATAGATATTCTAGAAGAAATCAAAG
Seq A exon
GTAACTTTACCAACTCAGGATAATGTAGCTCAACAATATGGAAATGGCCAATAGGGTTTTTTGTTTGTTTTGATTTGGTTTGGTTTTAGCCAGTAGTTTTTAAAATCAAGACAACATCCCAATAAGCTCAACTTCAAGGTGATGTAATTTAAAGCATTTCTCCCAAAAAGTGCATATAAAATTGAAAATATTTATGGTTTTATGTACACAACTTGTATCCAAGCACAACGTTAATAAAAAATAATGTGTGTACCTTCCTTCAAGCTTTGAGTATGGAATACAGAGAAAATATAAAGCAATTTTTTTAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGTATTCAGATGCACCAGAAGAGGACATCAGATCTTATTACGGGTGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTAAGGAAGAGCAGTCAGTACTCTTACCTGAAGAACCATCTCACCAGCCCAATATAAAGCAATTTTATGTTTACCCTGAGAACAGTCTTCAAGATATTTTATGTATACAAAACAAGTTTTTATTAAAATAGTTTTTGCTTCAGTATTTTGCATGAGGAATACTCAAGTACTTGGATATAGCGGCAAATATGAACCCAGCTATTAGGAGTTGAATTTGAAGGTAGCCCATGCATCATAGCAAGCAATTGACCTCAAAAACAGATAAGACTTAGATATTCATTGTTCCCAAAATAGTTAACCTGTTAGAGGTATTAAGAAGTCTCATATGATTAGGCTAGCAAAATGATTCATCAGGTAAAGGCATTCACTGCCAAGTTTGACCTGAGTTCAATCCTTGGGACCCATATAGTAGAAGAGAACCAACTCTTAAAAGCTGTCCTCCTGCTGGGCAGTGGTGGCACATGCTTTTAATCCCAGCACTTGGGAGGAGAGGCAGGTGCATATCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACACAGAAAACCCCTGTCTTGAAAAACAAACAAACAAAAAAACACAACTGTCCTCCTACTTCCATATGCCCACCATAGCATGTACACAAACAAATAGTAAATAAACAAATGCTAACACAAAAAGAAATCCTATATGAATATAGTGCCTTAATATTACCTGTCTTCATATCCTGTAGAACCTTCAATCATATTAAAAAATTCTCAGAAATTCTGTTTGTAAGGAATTTATAACTTTATTGTTATAAAGTTGTGCTTTCCCTTTTTTTAAAATTTTAAACAG
Seq C2 exon
AAATGAAGTTGTGGAAAGACTGTTGGAGCATAGCAAAGGTACTGAAAGTAAAGAAATCTTCAGACAGATTCCAAACACCATTGTGAACAGGAAAAGTTCTCATAGAACAATGCTTAGTGAAAACCATGTGTACAAGGACAACGTGCTCATTAGTCAGTCATCTCTTACTGTATCTGTGCCTCTTCAGACTCCACACAAACCTCATGAATATGAGCTACATGGAGAGAACCTCTATAAATTTGGAGAATGTGAGAAAGCCTTCATTTATCCAGAATGCTTTCTGAAGCATAAAGACAGTGGCACTAGACAGAGATCCTATGAGTTGAACCAATGTGAGGAAATCTTCAAAAGTAATGATTACATTCAAATACGTGTGAATGATGAAACTAGAGAAGAAATATGTATAGATAAGCAGCATTATGCCTTTAATTACCCTGATTTTCTTCAGTATGTTGAAAAGGTCCACACTGGAAAGAAACCCTATGCGTGTAAACAATGTGGAAAAACCTTTTCTTTTTTGAGTAACATTAAAAGACATGAACGGATTCACTCTGGAGAGAAACCATACAGGTGTAATATATGTGATAAAGCCTTCACTTGTTCAACTAACTTTCAAGAACATGAAAGAACTCATACTGGAGAGAAACCCTATTTATGTACACAATGTGGTAAATCCTTTTCTTTTCTGAGTAACATTCGAAGACATGAACGTACTCATACTGGAGAGAAACCGTACAGATGTAATGCCTGTGGTAAGGCTTTCAGTTATTTGACAAACTTTCAAGACCATGAAAGAACTCATACTGGAGAAAAACCTTACGTGTGTACACAGTGTGGGAAAGCTTTCACTTACTACTATTCATTTCAGACACATAAACGATGTCACACTGGTGAAAAACCCTATGTATGTAAGCAATGTGGGAAAGCCTTCAGTTACTATAATTCCATTCAAACACATAAACGTTGTCACACCGGAGAAAAGCCCTATGTATGTAAGCTATGTGCTAAAGCCTTTACTACTCTCAGTTCTCTTCGATATCATGAGAGGATTCACAGTGGTGAGAAGCCCCATGTATGTTTGCAATGCGGGAAAGGTTTCAATTCTTCCAGTACCCTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTATAAATGTAAGAAGTGTGGAAAAGTCTTTAGTGTTGACAGTTCCCTCCGATGCCATGAAAGGATTCACAGTGGGGAGAAGCCCTATGTATGTAAGCAATGTGGAAAAGCCTTCACTCGTCATACCTCCCTTCGATGCCATGAAAGGATTCACTGTGGGGAGAAACCCTATATATGTAAGCAATGTGGGAAAGGTTTTATTTCTTCCAGTAACTTTCGAAAACATGAATGGACTCATTCTGGAGAGAAACTCTGTGTATGTAAACTATGTGGTAAAGCCTTCACTGGACATAGTTCACTTCAACGCCATGAAAGAATTCACAGTGGAGAAAAACCCTATGTATGTAAGCATTGTGGGAAAGATTTCTCTTCTTTGAGTGGTTGTCAAAGACATGAACAAATTCACACTGGTGAAAAACCCTATGTATGTAAGAATTGTGGGAAAGCCTTTACTAATCCCAGTGCCCTTCGAAATCATGAAAGGATTCACAGTGGTGAAAAACCCTATGTATGTGGACAGTGTGGGAAGGGTTTCATTTCTTTTAGTAAGTTTAGAATACATGAACGGATTCACACTGGAGAAAAACCATATAAGTGTAAGCAATGTGGGAAAGCCTTCACTGGTCACAGTTCCCTTCGACGTCATGAAAGGATTCACAGTGGAGAGAAACCTTTCGTATGTAAACACTGTGGGAAATCCTTTTATACTTTAAGTGATTGTCAAAGACATGAACAGATCCACACTGGTGAGAAACCTTTCATTTGCAAGCAATGTGGGAAAGCTTTTACCCGGTCCAGTTCCCTTAAAATACATGATAAGACTCACAGTAGAAGTCCCTAAGTATAGAACATGGAAAGGCATTCTTAGCATGACAATGCATCGGGCAGAGACCCGGGGCCATGTTGTCTGTAGGAATGCCTCTAGTCATCTTGATGGCATTCACCTATGTGGTAGTTCATAGCATAGTGAGAAGCTCCAACATGATGTCAATAGAGACACATACCTTAAATGGATGTATAGAGAAGTCTTCAGTTGGCTAACCTCTGAGAAAGTACCCAATATCAAGTTGTATAACAAAATTATCAAAACAGTTTACAAAGATTTATGAAAATTCCTTAAGTAATGAAATTCATTAATTCGTTTTAAGATCCCTGTAACTAAACACTAACTGGTCAATAATTCAGAAGATAAATCACTAGAATGTTTACTTATAATTTTGACTCTTGTAAGTAAATTTTCAGATGACCTAATCTCTAAGTGTCTTTAAGCAGTAAGGCATGAATTTAATGGGTTGTGTCTTTACAAGTCATGTACATTTCTTCTTTCTGTATTGGATTCAAATGAGATGTATTCCTAATATGTTTTAGAGTAATGTTAATGAGCTGTTGAAAAATGAAATTTTATTTTTAGGCTTTCTCTATTGACATCATGTGGGAACTTCTTATCTTTGATATTTTTGTATTTCTCTTGTTTGTTTTTTGTTGTTGTTGTTGGATTTTCATTTGAGTCAGGGTTTCTCTGTGTAGCCCTGGCTACCCTAGAGCTGGTTCCTTAGACCAGACTGGCATCAAACTTGGAGATCTATCTGTCTCTGCTTCCCAAGTGCTGGGAATAAAGGTGTGTGCCATCATGCTGGGCTTTATCTTTGATGTTTATACTGTGTCTTTTCTATTCTTCTCATTGTTAATGCCAAATACTTGAAACAACTTAAAAGGGGGGGTTGATTTCTTCCTTTCAGCTCACAGTTCATTATGGCAAGGAAGTCATAAAATACAGGAGTTTATATCATTTTGTGGCCACTAGAAACTAGTATACATTATAAGAAGGAACCAGTAGACCATTTCACAAGGACAACTTTTCCCAATGACTTACTCCCTCCAATTATGTCATACCTCCTGCATATCACCTCTCCGAACTGTACCTCATATGCAGAGGGAGTCCTCTGTCTAGCATAGAGCCCTGTTGAGCTAATAATTTCTGGAAGTGACAAGGAATAGTTGTGCTACTATTGTGCTAGCATCTCACAGTGAAGTCCAGTTGATTTCTCAGATAAAATGGCATTTTGTATTTGATGTTTTATACTTTGATATATGTTTTCTTGAAGACTTTGCACACTAGACTTCTGAAAGTTCTAAACTATTTTGGCCAATTTGCAGATTATCAAATGAAAAGATATCTGCAAATATCCTACCATAATCATAAGTTAGATCGCATATATGCCTGTTAATATCTACCTTTAATGTCAAGTCATTGTCGTGTGCTTACAAATAGTGCTTGCCCTCTATTCCTGAGTTAATCTCAGCTCAGGCTTGTGTTGTAACTTTGCTTTGTTACTTGTGCTTTACTCATACACATAGTTTAAGTGCCTTTTTACCAGAGACTGCAGGGACCTTACTTTTTGTGGATTAATATCTAATGAATTATGCTTCCAACTCTATCTGTAACCATAAGTGGCCATGTATTTTTGTCATTAAAATCACTTTCCCCCTTTTATTGTTTTGTTTTTTTAGACAAGCTCTTACTCTGAACCCAGGTTAGCCTGTAATTCACTCTTATTTCAAGGATAACAGGCCCAAGCCATTACATCATGCTTGAAAGTCATTCTTGTTTAAATTTCTGAAGAATTTGTTTTAGAAGGATCACTTGGTACTGAACATGAAATGTCCCCCATACTACACTGATATCAAACATACTAAGGCACATCCCTGGCTACACTGTAGGTGTGAGCATAGATCTTTAGCGCTTGGTATTTCTTACCCAGAAGGCTGCAATTATGCAATAAAGGGAAACATAAGTCATGAGAAGAACTCAGTACAATTAATAAGGGCAGTGGTGGTTCTTTTCCAGGTTTCAAAAGTACAGTTTCACCAAGAAGTATATAGTAGGTTGAACATACAGTTGATACACTTAAGTTCGAACTCCAAAGCTAAGTTCAGTCCAGCTTCAGTATGTTTAGATCATTTCTATTAATCTATAGTTGAATAAAAGTATAAAGCAATGGCTTTTATAGTATGTTGAATATATCATATAGTTCACCAAATACTTGTATTGAATGGCATCAGTTTATGTGCTCCCGCATCGGTGGTGGCTTACTATGCTGCTTGCTACTATCCAACCAGCATCATGAGAAACTGTACTTGTATATCTCAACTTCAAATTGAGCTCATCTTGAAAAGTGAAGATATCTTCTGTTGTATATTTTATCCCCAGCATCTTTACGTGAAAAAGTTAATAGCAAAACCATCATGAGTCAATTATCACCTTTGGCTCAATTCAAATGTGTAATCCACCTGTTCCATGTGTGTATATTTACTGCTTAAGTCTCCTGGGATTGTATTGGTTACTTTTGTATTGCTGTGATAAACCAGATGGAAGAAGAACTTAAGGGAGGTCTCAGTTCATTGACCCAAAGAAGGCATGATACTACAGAAGTCAGCAGTGATACAGTGATAATATGTCTTAGTCATTGCTCTTCTATTGCTATGATGAGACACCATGACCATGGCAAGTCTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCATGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCAAGGATTAAAGGCGTGCACCACCACCGCCGGCGACCTTGGCAACTCTTATAAAAGAAAACATTTAACTGGAGACTTGCTTACACTTTCAGAGGGTTAGGCTGTTATTGTTGTGGGGAGCATGGTAGAACACTTAGTTCAGCAGCAATAACTTGAGAGCTGCATCATGATCTTCAGAACAAGAGAGAGCAAGCTTAGCCTGGTATGACCTTTGTGAAACCCCCAAGATCACTTCTAGTGACACCCTTCCTCCAACAAGGCCTCATCTAATCCTTCACAGTTCTACTCCCTGGTTACTAAGCATTCAAATATATGAGCCTATGGGGTCCATTCTTATTCAAACCACCACCAGATTTGGCTGCTACCAGCAGCCAGGAAATAAATAGTCAAAACCTTCAAAAGTTGACCTGCTCCTGGTAATATACTTTCTCTACCCAGTCCCCACTTCCTGAAAGCTCTATGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAAAAGCAAGGTGCGGAGGAAAGGGTTTATTCAGCTTACACGTCCACATTGCTGTTTATCACCAAAGGAAGTAAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTAATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTACTTCCCACGGCTTGCTCAGCTTGCTTGCTTATAGAACCCAAGATTACCTGCCCAGGGTACCTTGTGGGTGGTGGCTTACTATGCTGCTTGCTACTACCCAACCAGCATCATGAGAAACTGTACTTGTATATCTCAACTTCAAATTGAGCTCATCTTGAAAAGTGAAGATATCTTCTGTTGTGTATTTTATCCCCACAAGGGCCCTCCCTACTTGATCACTAATTGGGAAAATGCTCCACAGCTCGATCTCATGGAGGCACTTCCCCAACTTAAGCTCCTTTCTCTGTGATAACTCTAACCTGTTTTAAGTTGACACACAAAACTGGCCAGTACAGTTGTGAACCCTGAAATGTTTATAAAACAGGAAGAACTGTTAACAACAGTGAATGGTGACAGCTAACTGAATCTGGAATGTGTGTCTCTTATAAGGAAAATAACTGTGGCTACATAAAGGTGTCCACATTGCCATTTATTCTGTACCCCTTCAACCCTGTGTCTACAGGTGTGAAATGCCACGCACTCCGGTCAAGTCTACTTGACAGGCTGAAAAGTCTGTAAGCACTCAACGAGGAAAAGAGTTTCACGGAAACTCACCTCCTGGAGCTTTGACGTTCTCATTTACCCATATACTCATACTCTATTCCTGAGTTAGTCTGGTGTATGGAACTACAAGCTCTCTTTTAATATTTTATTATAAATGCCTTTTAAGATTAAATCCTGTTATAGTTAAGTCTCCCCAGTGTTCCAAGATTCCAGAAGCCAAGCTTAGAATCCTGTAAGAATGCAGTAAGGAAGTTAACCTATTCAGTAACTAATTAAACATTACAAAAGATGGAGCCAGTAGCTCAGAGCTGGTCTGCAAAGTATTTACTAAGGACAGTAGCAAATCTCACCCAAACAAGGGAATACCAAAATAAAGCCAGGGAATCCCATTGAGATAGAAATCTTCAGTACAGGCTACATTGCATATTAGAAGCAAGTTGGTAAATTCTTCTGACAAATGGAGATTCTCCAGATACTTAAAAGTTACACTCATATAAGAATTTAGCAAGGCCTAGGAAATAGGGGGATTGTGATATTGCATTATTCATGAGGTCTGCTAAGAGCAGAACCCCCTGGTGCTAGCCTTCACAAGGATCAAAGGTATAGCACTAGAGTGTGAAATCCTCACCTGTCACTAAGCTGACCATAGGCAGGACTGCTTTATCTTTACTGTAAACATCTACCTGGTTCCTGTAAATCCTTTTGAAGTCATTCCTTTGTTTTGTACCTGGTAACTTCAATGTACTTTGCCTGCTACCCTTTGTATTTTCTGTACTATATGAGATTGGTGTTCACTTTGTGACAATACATTCAGATTCTACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056019:ENSMUST00000188685:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.959 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF079757=C1_4=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGAACATAGATGAGGACC
R:
AGTGCCACTGTCTTTATGCTTCA
Band lengths:
351-1609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types