RnoALTD0034638-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006925 | Zfp786
Description
zinc finger protein 786 [Source:RGD Symbol;Acc:2293500]
Coordinates
chr4:77506906-77510253:-
Coord C1 exon
chr4:77510153-77510253
Coord A exon
NA
Coord C2 exon
chr4:77506906-77507032
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TATGATGTCTTTCACTTCAGTTA
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGCGAAGCGGGTACCTCCTTTGTCGCCGGGGAACGTGGGCGTCGCCGGGGACAAAGCTCAGGCTAGGCGCGTCCGCGCTGGCCATGGCCGGACCCGCTCCG
Seq A exon
NA
Seq C2 exon
TTACCGCTGACTTTTGAAGATGTAGCCATTTATTTCTCTGAGCAAGAGTGGCAGCACCTAGAGACATGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTATGAGACTCTCATCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006925-1-2,2-2,3-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCTCCTTTGTCGCCG
R:
TGAGAGTCTCATAATTGGTTCTCA
Band lengths:
210-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]