RnoALTD0034638-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006925 | Zfp786
Description
zinc finger protein 786 [Source:RGD Symbol;Acc:2293500]
Coordinates
chr4:77506906-77510253:-
Coord C1 exon
chr4:77510153-77510253
Coord A exon
chr4:77509793-77510152
Coord C2 exon
chr4:77506906-77507032
Length
360 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGA
5' ss Score
6.84
3' ss Seq
TATGATGTCTTTCACTTCAGTTA
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGCGAAGCGGGTACCTCCTTTGTCGCCGGGGAACGTGGGCGTCGCCGGGGACAAAGCTCAGGCTAGGCGCGTCCGCGCTGGCCATGGCCGGACCCGCTCCG
Seq A exon
GTAAGGGCTCGGAGCGGACAGAGCTTAGGCAGGGGTAGGGCGGGGGCGGCGGGGATTCCCCCCTTTCCCAACAAAGCCTCCTCTGCGCGGCGTTTGTCTGCGCCACCGTCGCAGCGGCTTCGTAGCCTTTTCTCACCAGCAGAGCAAACGCCTTCGGGGGTGGGTTTCCGCACGTTTACAGTGGTGTCCTGCGGGTTTACAGTGTCATAATTTGACCGCACGCAGACTGCCGCCCATTGCGTTCGCGTTGAGTGTGTGAGAGAGGATCTCACACTAGGAGGGTAGAAATGGGTAGTAAAATCTGCTCGGAGCACGTACTGTTTGATTATTTAATGTTTTGTTGAAATCAGGATTTAAAGG
Seq C2 exon
TTACCGCTGACTTTTGAAGATGTAGCCATTTATTTCTCTGAGCAAGAGTGGCAGCACCTAGAGACATGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTATGAGACTCTCATCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006925-1-2,2-2,3-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTCCTTTGTCGCCGG
R:
TGAGAGTCTCATAATTGGTTCTCA
Band lengths:
209-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]