RnoALTD0034705-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231889456-231891617:+
Coord C1 exon
chr2:231889456-231889641
Coord A exon
NA
Coord C2 exon
chr2:231889943-231891617
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
AATTGTTTTAATCTATTTAGGGT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTGAAACCTGGAGATGACTTGGAAACTGACCGGTATTTAATCACAGTTGAGGAGGCTAAGGCTGCTGGAAGCAGAGCTGTTGAACCGGATGGCCCTAGAGAAGCCCTGGAGTCAGGCCCAAGGACCCTTGTATCCTCCAGCCGGTCTCTTGGGTGTCAGCCATCTGGCTTAAAAAGGAAGGCTACT
Seq A exon
NA
Seq C2 exon
GGTTTTCAAAGACCATATAAGATGCCAAAGAAAGTGGCTGTTACTGAAAACAGTGGACCAGCTGCCTCGCTTGGCGATGGGAACTCTGGCTTGCCTGGCCCAAGATTTCTTCCCACGTTCTCCAACACACTTCCTTTGTTTTCCACTGTTGGTCATAAAGATGTGACGACTACGTCAGCAGACAACGAGAGTCCTGTCACGTTCAGGAACACAGAGAGAAGTGACATGTCTCTATCATCTCTTTCTTCATCCTTCACGATTAACACAGACACACTAGGTAAAGAGGACAAACTTTGCTTTCCTGTAAGTTCTGAAACCAAATATTCAGACTCTTTATTGGCCAGTGAACCCATGAGAAGAAATGGCTTGGACTCTTTCTGTCCTGGAGTTTCACAAACCATCAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCAGCTCAACTACCAGGAAGGATCTGCCTGATGAGAGTACAGGACACGTTCCTAAGATACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.483
Domain overlap (PFAM):
C1:
PF103824=DUF2439=PD(33.8=43.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCTTGTATCCTCCAGC
R:
GGCAGCTGGTCCACTGTTTTC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]