RnoALTD0034748-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145138814-145139857:+
Coord C1 exon
chr5:145138814-145138914
Coord A exon
chr5:145138915-145139385
Coord C2 exon
chr5:145139719-145139857
Length
471 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCTTTATATTATGTTTTAGGAG
3' ss Score
10.74
Exon sequences
Seq C1 exon
CCTTGTGGACAGGCTGGGGGAATTCTGGTTGCGAACGGGAACGCCGGAGAATTTGCGACATTCAGAGGAGGGATACGCGCCTGTAGATGGTCACAACTGTG
Seq A exon
GCAAGTGGTGGAAAGTTCTCGACCCGGCTTCCCGACAGGGTTTTAAAGACCTGTTGTTTCTATGGCTGGCTGGAATTGATGAAAGGCCTTTTGCGAGGGTTACCTTTTTTAGCTTAGCTTACATTTGTACAGTTTGGGAATCTGAAAAGAGCCCAGATTTGCGTTTATAGCAGCTGTTCTCAACTTGTGGGTCGCGACCCCTATTAGGGGTCGCAGATCAAATATTTACATTACAATTCATAACTAGCAAAATTACTGTTATGAAGTATAGTCACGAAATGATTTTATAGTTGGGGGTCATCACAACATGAATTGAGTTTAGGAAGGTTGAGAAGCACTGGTTTATAGGAAGACGTTAGGGGAGTCGCCTCCAGAACGTCCAATTGGTCCACCTGCAAACGGGAATCTAGCGTTCCAGTTGTGATGACGTCTGAGGCTCTGAAGTGACTTTAGGCTGAGTTAGAGGCAAAG
Seq C2 exon
GAGCCATCTTAGTTTTAGATGGGAGAAGAACTCTGCATAAACAGTTAGAATGAAAGAACCTTTGGATGGGGGATGCGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAGAAGAACCTGATGATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865-3-0,4-0,5-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGACAGGCTGGGGG
R:
TGAGCATCATCAGGTTCTTCTT
Band lengths:
238-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]