RnoINT0169190 @ rn6
Intron Retention
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145138697-145139857:+
Coord C1 exon
chr5:145138697-145138914
Coord A exon
chr5:145138915-145139718
Coord C2 exon
chr5:145139719-145139857
Length
804 bp
Sequences
Splice sites
5' ss Seq
GTGGCAAGT
5' ss Score
2.6
3' ss Seq
TCCTTTATATTATGTTTTAGGAG
3' ss Score
10.74
Exon sequences
Seq C1 exon
GTGGCAGCTCATCACGTGACGCGCGGCGGGCTGCGCAGCGGTGGTGCCATAGCATCCTGAGGCTTGCTGGAGTTGGTAGCTCGCGCGCTTAGTTGGAGACTGAGTTCCTCCGCTGGCCCTTGTGGACAGGCTGGGGGAATTCTGGTTGCGAACGGGAACGCCGGAGAATTTGCGACATTCAGAGGAGGGATACGCGCCTGTAGATGGTCACAACTGTG
Seq A exon
GCAAGTGGTGGAAAGTTCTCGACCCGGCTTCCCGACAGGGTTTTAAAGACCTGTTGTTTCTATGGCTGGCTGGAATTGATGAAAGGCCTTTTGCGAGGGTTACCTTTTTTAGCTTAGCTTACATTTGTACAGTTTGGGAATCTGAAAAGAGCCCAGATTTGCGTTTATAGCAGCTGTTCTCAACTTGTGGGTCGCGACCCCTATTAGGGGTCGCAGATCAAATATTTACATTACAATTCATAACTAGCAAAATTACTGTTATGAAGTATAGTCACGAAATGATTTTATAGTTGGGGGTCATCACAACATGAATTGAGTTTAGGAAGGTTGAGAAGCACTGGTTTATAGGAAGACGTTAGGGGAGTCGCCTCCAGAACGTCCAATTGGTCCACCTGCAAACGGGAATCTAGCGTTCCAGTTGTGATGACGTCTGAGGCTCTGAAGTGACTTTAGGCTGAGTTAGAGGCAAAGGTGAGGCATTTGCCTTACTTGGAGAAATCAAAGCAGACATGGGTCTCAAGTCAATGCCCACGCAATCAGAAATGAAGTACTGAGTCCAGCTGAGTCCCCTTGGTAGCTTCCTTCCGTGGCTTGTTCAGCCAGTCTCTATCTCAACAACCTTCGATATAGTAAAGACCATAGTGCTTGTCTAAGACTTTTCTCATTGGAAGGTAGCAAATCCAGGAGCAAAAAGAAGTTAGTCCTAGTCCCAGAAGTCGCTCAAATGCTCGACCCTGAAGCTATGAGCATGTTAGTATGAAGGAAAACAAAACCCGAGTACCAATCCTTTATATTATGTTTTAG
Seq C2 exon
GAGCCATCTTAGTTTTAGATGGGAGAAGAACTCTGCATAAACAGTTAGAATGAAAGAACCTTTGGATGGGGGATGCGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAGAAGAACCTGATGATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865:ENSRNOT00000019135:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGCTCATCACGTGAC
R:
TGAGCATCATCAGGTTCTTCTT
Band lengths:
356-1160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]