DreINT0139563 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14762830-14763148:-
Coord C1 exon
chr17:14763090-14763148
Coord A exon
chr17:14762995-14763089
Coord C2 exon
chr17:14762830-14762994
Length
95 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TCTTTTGTTTTTAATTACAGCCA
3' ss Score
8.13
Exon sequences
Seq C1 exon
ATCTTCAAGAAGAAATACAGTCTGAGCTTAGGATCGAGTCATCGCGAAGTGATGCTATT
Seq A exon
GTAAGTTTCAATGAAGAACCAATATTTCACAATATTGGCTGCTTGTTAAAGATGTTGTCCTTTTTCATAATAATATCTTTTGTTTTTAATTACAG
Seq C2 exon
CCAGAGCCGCATTTAGAAACCACAGACAGAGATACAAGTTACTCACCTGTTATAAGAATTAAGGATGAGCCTATTGATGAAGACTATGATAAAGCGTTAATGCCAGAGTCAGACTTGAGCCGAATTAAACAGGAGCTTGACGGGTCTGATAATAATGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTGAGCTTAGGATCGAGT
R:
TTCGGCTCAAGTCTGACTCTG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]