GgaINT0137479 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4691264-4692098:-
Coord C1 exon
chr23:4692031-4692098
Coord A exon
chr23:4691435-4692030
Coord C2 exon
chr23:4691264-4691434
Length
596 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTTTCATATTATTGTTTCAGGAG
3' ss Score
9.05
Exon sequences
Seq C1 exon
TTCATAATCAAGTAGAAGAAACATTACGGACGCAGTTAGCGCCACAAACTCCAGAAACTAACTTCAGG
Seq A exon
GTAAGCTATAGATCTTTCAAACACTTTTGCAAGTGCAGCAATATACTGGAATAATTCAAAATACTTATGTTATATTTGAGTGTAAATTTGAGTATCAAGAAAACTGATCTTCTGACTCATAGACGTCTTTGCTACTTAAACAATCTGCATATAATTTTGTAAAATTTTGCTGACCCTCTCTTTGAATTGAGGATTCTTTTGATAGCCACTTTCATGTCCAGCATGGTCTGACTTTGACGGGTGAGTTGATTCCAGACCTGGACGCATCCATCTGACCTGTTGCCTTTTTTCCAAATGAAACAGGGAACAGCTCTATCAACAGGAGACACTGCCCAACCAACCAAGTGCCCTTACTGACAACCATCTTAGAGAGCTGGGTGACTTCTGCTTTGTCCAGAGGAGTGAAAAGGATTGGGGGTGGGATAACAGAGGGTGCTGCAGGGAGGTAGAGGCAGCAGCTGCTGCCCTTCGTTTCTCCCACCGTCCAGTGGCAGGACCCATTTCTCTTGGTCTACAACAGAAACTCCCCTTGGCATCAGCCCAACTCCTCTTGGCAGATGCAGGAGGGTGAATTCTTTTTCATATTATTGTTTCAG
Seq C2 exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTAGAAGAAACATTACGGACGC
R:
ATTTTGTCTAATAGTCCCTGCTGTGG
Band lengths:
206-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]