RnoINT0169179 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144939820-144940405:-
Coord C1 exon
chr5:144940344-144940405
Coord A exon
chr5:144939991-144940343
Coord C2 exon
chr5:144939820-144939990
Length
353 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCCTTTATATTGTGTTTTAGGAC
3' ss Score
12.59
Exon sequences
Seq C1 exon
CTAATCAAGTTGAAGAAACATTACATACTCATTTACCACAAAACCCAGAAACAAACTTTAGG
Seq A exon
GTAAGTTTTCAGTGTATATGTAGATTGCTGTTAACTGTGGCAAGTGTCAAAAGTTTGTTGTTTTTTTTTTTTTTTTTTATGTCACTTTTCAAAATTCTGCTTGTGTTAGACAGAGCACTGACTTTTTTTAAAAAAGTATTATTTGCGTAACGACATCTTGAGAGATATTCTAAGGAGCCTTGCGTCTTAGGTTCTTTGTTTGCATTATTCAGACATCAGGTTTTAGGCACAGGGACACTAACATATGTCCGTCCATAGAGTTCATTTCCAGTGAGCTTTACTTTGGGTATTAACCCTGAAGAGGAATAATTTTTAAATTTGAATATTTATTAATCCTTTATATTGTGTTTTAG
Seq C2 exon
GACTCCAGCTACCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGGAATTCGTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAGTGGCGCCTCAGCAGGGACTACTAGACAGAGTTAAAGACGAACCTGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATTTACCACAAAACCCAGA
R:
TGAGCATTGTCAGGTTCGTCT
Band lengths:
206-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]