HsaINT0186057 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35496148-35497569:-
Coord C1 exon
chr1:35497416-35497569
Coord A exon
chr1:35496315-35497415
Coord C2 exon
chr1:35496148-35496314
Length
1101 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AGCCTGAGTATGTATTTTAGGTG
3' ss Score
4.34
Exon sequences
Seq C1 exon
GAGGGCGGAGACCAAGGCTGCGCAGGCGTGGTTGGCCGGTCGTTGCGTTGGGATGGATCAGGCGGAATTCCAGAAGAGAAAATAATCCCTGTCTAGATGCAGAGGACTTGGTTCCTATTCCAGTGCTCCTCCGGTAGCAGGGAGGCGACAGAAG
Seq A exon
GTGGGTGCGGCCGCAGTGGTAGTGGGCGGGACGGCGGGGCGGAGGCCACACCACGTGACGAGGCGTTGCGGCGGGGGCGGTGCCAGGTGGGCTACGCGGCTGGGGCGGCTGCGGATATCGCCTTAGGGACGCGTTGACATTCACTGGCTAGTCCACCGCTCTCAGTCGGAGACCACATTGCCTCGTTAGTCCTCAATGATGGGAGTGGGAATTCTTGGTGGGAAGGAGAATTTCGGAAAGCGTGCGGTTCTCAGAGGAGGGATGAGCGCCCGTAGATATTTTGTGGCGAGTGCGCAAAAGTTCTCATTTCTTCTTTGGAACAGGCTTTTCAACCAGTTGTCCGTTTCCATCCCGGACTATTCGGATAAAGACAACTTTGAAGAGCTTTTTGTTTTAGGTTTAATTCGTCCCGTTTAGTTCTTTGACTTTTAGGGGAAGGGAATTTACTGAATGGCCAATTGAGTTTCTTTTCTACAGGAAGGCGATTGTGAAGCGGGGCTCTGAGGGGCTTGATGCCCCCCACCCCTCACACGGAGACCTTGAAAGAGGCAGGTGACTCACTTTCAGTAAGGGCGTTCCTGTTGTTCGCCTGCGATGGATGGCATCTTGAGCTCACATCTAGCGTTAGGCCGAGAAATGGGGCCCTTAGGGAGGCTTCCAGTGAAGGTTGAGTTATAGGTCAGGGCCGGGAGGTTGTTGTGCCCCTCTTTGAGAAATAAAAGCCGACGTGGGCCTCTAAGTACTGATTCTTATGGGGTCAGAAACTATTTCTTGAGTCCGTTCTTCTCAGAGTTTATTACTTCCTCCCACGTCTTGGTCTGCTGGTCTAATTCCCTTCAATAACCTTCAACATAGGAAAAAACCAGAGTGTGTTGTGTGTCTTTAAAGATATTAGAGAAGTGGGAGCTGTTGCCCCAAAACTGTTTTCTTATGTAGCTACTGAAGGAACAGAAAGCAGGAAGAAAGAAAAAAGTTAGTTGTGGCCCCAGAAGAGTTGTTTTTCAAATGCCGAGCCGTGAAGCCTCATGCACTCAACACAAAGTTTTTCTTTCATATAGATAAGCCTGAAGAAAAAAGAATAAGCCTGAGTATGTATTTTAG
Seq C2 exon
GTGTCCAACTATCCATTACCAAGAAGAAATCTATTCGTTTGAGCCTGAGACACTCTTTGAGGTAAAAAATTAGAATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCAGTGGTACCACAGCAGGAGCTTCTGGACAAAATTAAAGAAGAACCAGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.201
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCAAGGCTGCGCAG
R:
TGAGCATTGTCTGGTTCTTCT
Band lengths:
313-1414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)