RnoALTD0034815-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000039234 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:RGD Symbol;Acc:1309981]
Coordinates
chr12:19262938-19268721:+
Coord C1 exon
chr12:19262938-19263038
Coord A exon
NA
Coord C2 exon
chr12:19268007-19268721
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGACAACTATGTTTTTGTAGGTT
3' ss Score
8.15
Exon sequences
Seq C1 exon
GCTGCGCCCCCTCCTGCGGGGCGGGGCTCTGACGCACTTCCGGTTGTGCTATGGTTCAGCCGCTGTGAGGATTCCAGACTCCAAAGCGGTTCTGAGTCACG
Seq A exon
NA
Seq C2 exon
GTTTGGAGTGTGGCACTTTAAGAACCAGAAACCCAAAGGCTCCAGGCCTACTCCTAAGAGTCCTGCTGGTTCTGGAGTCTGTGTCATGACCAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAGTCTATGGGACCTTCGCCCATTAAAGTTGAAGAGGATGAAGAAAAAGACAAGTGCCGCCCTAGCCTAGAGCTATCCCGAAAGCGCTTCAGGCAGTCTAGAAACCAGGACACTCTTGAGCCAATGGGACCTTCAACCATTAAAGCTGAAGAGGAGGAAGACAAGGACAAGGGCCACCCTAGCCTAGAGCTATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCATGACACTTTGGAACAGTTGGGACCTTCGACTGTTAAAGCTGAAGAGGATGAAGAGAAGGACAAGGGCCGCCCTAGCCTAGAGATATCCCGTCAGCGCTTCAGGCAGTTTGGGTACCATGACACTCCTGGGCCCCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039234-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.643
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=44.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCCAGACTCCAAAGCGG
R:
CTCCAGAACCAGCAGGACTCT
Band lengths:
110-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]