RnoEX0102296 @ rn6
Exon Skipping
Gene
ENSRNOG00000039234 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:RGD Symbol;Acc:1309981]
Coordinates
chr12:19262977-19269618:+
Coord C1 exon
chr12:19262977-19263057
Coord A exon
chr12:19268007-19268721
Coord C2 exon
chr12:19269429-19269618
Length
715 bp
Sequences
Splice sites
3' ss Seq
TGACAACTATGTTTTTGTAGGTT
3' ss Score
8.15
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCGGTTGTGCTATGGTTCAGCCGCTGTGAGGATTCCAGACTCCAAAGCGGTTCTGAGTCACGGTGAGCCTGCGAGTCCCAG
Seq A exon
GTTTGGAGTGTGGCACTTTAAGAACCAGAAACCCAAAGGCTCCAGGCCTACTCCTAAGAGTCCTGCTGGTTCTGGAGTCTGTGTCATGACCAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAGTCTATGGGACCTTCGCCCATTAAAGTTGAAGAGGATGAAGAAAAAGACAAGTGCCGCCCTAGCCTAGAGCTATCCCGAAAGCGCTTCAGGCAGTCTAGAAACCAGGACACTCTTGAGCCAATGGGACCTTCAACCATTAAAGCTGAAGAGGAGGAAGACAAGGACAAGGGCCACCCTAGCCTAGAGCTATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCATGACACTTTGGAACAGTTGGGACCTTCGACTGTTAAAGCTGAAGAGGATGAAGAGAAGGACAAGGGCCGCCCTAGCCTAGAGATATCCCGTCAGCGCTTCAGGCAGTTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTGAGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCTGAGATCCACACCAAGGAGCAGATTCTAGAGCTACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGGCCTGGGTACAGCAGCACTGCCCTGAGAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTGGATGAGCCTGGACTGCAG
Seq C2 exon
GTCTCATCTCCAAATGAACAGAAGCAGTCTTGGGAGAAAATATCAACTTCAGGAACTGCAATGGAGTCCTTAAGCAGCACTGAGACCCAGCCTGTGGATGCCAGCCCTAAATATGAGTTTTGGGGGCCCCTGTACATCCAAGAGACTGGTGAAGAGGAGGTTTTCACTCAGGACCCAAGAAAGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039234_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.643 C2=0.797
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=44.8)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTGTGCTATGGTTCAGCC
R:
CTTGGCGCTTTCTTGGGTCC
Band lengths:
270-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]