BtaEX6110804 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030956 | ZSCAN21
Description
Bos taurus zinc finger and SCAN domain containing 21 (ZSCAN21), mRNA. [Source:RefSeq mRNA;Acc:NM_001035368]
Coordinates
chr25:36926342-36931834:-
Coord C1 exon
chr25:36931807-36931834
Coord A exon
chr25:36926823-36927311
Coord C2 exon
chr25:36926342-36926534
Length
489 bp
Sequences
Splice sites
3' ss Seq
TGGTAATCATATTTTCATAGGTT
3' ss Score
5.65
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCAGCGGCCCGAGCGGCTCTGACTCACG
Seq A exon
GTTTAACGTGTAGCCCTAAAGAACCAGAAACCCACAGGAACCAATATTCCTGCTCCACGGAATCCTGTCTGTAGTGACAGCTGTTTCTGGAGTACCTCCGAGATGAAGGTGCTGGGCATGGCCACAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGGGCCTGTGATTGTGAAGATTGAGGAGGAGGAAGAGAAAGGGAAGCGCCTTCCCATGGAGATATTCCGCCAGCGCTTCAGGCAGTTTGGGTACCACGACACCCCTGGCCCGCGGGAGGCCCTCAGCCAGCTCCGGGTGCTCTGCTGCGAGTGGCTGCGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCACTGCCCAGAGAGCGCCGAAGAGGCCGTCACTCTCCTGGAGGATCTGGAACGGGAGCTGGATGAGCCGGCACCGCAG
Seq C2 exon
GTGTCCCCACCTCCCCGTGAGCAGAAACGGTCATGGGAGAAGATGTCACCCTCAGGAATGGCGGAGGAGTCCCTGAGCAGCCCGCAGCTAGAGTCTGTGGAGACCAGTCACAGATACGAGTCCTGGGGGCCCCTCTACATCCAAGAGACTGGTGAAGAGGAGAAGTTCACTCCCGCGCTGAGGAAGGTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030956-'0-1,'0-0,9-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.315 C2=0.908
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=75.8)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGCGGCTCTGACTC
R:
CTCGAACCTTCCTCAGCGC
Band lengths:
214-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]