MmuEX0054058 @ mm9
Exon Skipping
Gene
ENSMUSG00000037017 | Zscan21
Description
zinc finger and SCAN domain containing 21 [Source:MGI Symbol;Acc:MGI:99182]
Coordinates
chr5:138560878-138567874:+
Coord C1 exon
chr5:138560878-138560957
Coord A exon
chr5:138566206-138566918
Coord C2 exon
chr5:138567682-138567874
Length
713 bp
Sequences
Splice sites
3' ss Seq
TGGCAACTATGTTTTTGTAGGTT
3' ss Score
7.43
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CGATATATATCTTTGTCAGACTAAATAACTGTATGTTGGGCTTGGTGACACAGCTTTAATCCCATCACTCAGGAGGAGAG
Seq A exon
GTTTGAAGAGTGGCACTTTAAGAACCAGAAACCCAAAGGTACCAGGTCTACTCCTAAAAGTCCTGCTGGCTCGGGAATCTGTGATGACTAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAATCTATGGGACCTTCGCCCATTAAAGTAGAAGAGGATGAAGAGAAAGACAAGTGCTGCCCTACCCTAGAGCTATCCCATAAGCACTTCAGACAGTCTGGGAACCAAGATACCCTTGAGCCAATGGGTCCTTCGACCATTAAAGCTGAAGAGGATGAAAGCAAAGACAAGTGCCGCCCTAACCTAGAGATATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCAAGACACTCTTGAGCAGTTGGGACCTTCGACCATTAAAGCTGAAGAGGATGATGAGAAGGATAAGGGCCACCCTAGCCCAGAGATATCTCGACAGCGCTTCAGGCAATTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTGAGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCCGAGATCCACACCAAAGAGCAGATTCTAGAGCTACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGACCTGGGTACAGCAGCACTGCCCTGAAAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTTGATGAGCCAGGACTGCAG
Seq C2 exon
GTCTCATCTCCTCCAAATGAACAGAAGCAGTCTTGGGAGAAAATGTCAACTTCAGGAACGGCAATGGAGTCCTTAAGCAGTACTGAGACCCAACATGTGGATGCCAGCCCTAAATATGAGTTTTGGGGGCCCCTGTACATCCAAGAGACTGGTGAGGAGGAGGTTTTTACTCAGGATCCAAGAAAGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037017-'3-5,'3-4,6-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.662 C2=0.777
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=44.8),PF034808=SBP_bac_7=PU(67.9=26.2)
C2:
PF0202312=SCAN=PD(0.1=0.0),PF034808=SBP_bac_7=PD(29.6=36.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAATAACTGTATGTTGGGCTTGG
R:
CTTGGCGCTTTCTTGGATCCT
Band lengths:
254-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: