RnoALTD0034816-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000042213 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:RGD Symbol;Acc:1308619]
Coordinates
chr12:11779779-11783232:-
Coord C1 exon
chr12:11782804-11783232
Coord A exon
chr12:11782800-11782803
Coord C2 exon
chr12:11779779-11779980
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
ATGGGATTCATTCTTCTTAGGTT
3' ss Score
6.07
Exon sequences
Seq C1 exon
ACGGGTCACCCCTGTTGTTGTCCTCAGTCGTGCTGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCCGAAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCTAGTCCTGAGGCTTTTCGGCTAAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTGTGTCGACGGTGGCTGAGGCCTGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGCTCTACACCTGGATCCGGGAACACAGCCCAGACAGTGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq A exon
GTGG
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAACAGCTGGTCACAGCCCTGGGCGGAGGATCTTGGCAATCAGGTATCCACTTGGGGCCAGTAGAAGTCAAGCCTGAGTGGGGGATCCCTCAGGGTGAAGGAGTTCAGAGCTTAGGCCCAAGCACCGCAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042213-2-3,3-3,4-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=71.9)
A:
NA
C2:
PF0202312=SCAN=PD(1.1=1.5)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGAGGAGCTGATGGG
R:
CCTGATTGCCAAGATCCTCCG
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]